| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,079,957 – 17,080,057 |
| Length | 100 |
| Max. P | 0.549769 |
| Location | 17,079,957 – 17,080,057 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.07 |
| Shannon entropy | 0.70325 |
| G+C content | 0.50798 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -10.21 |
| Energy contribution | -10.75 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17079957 100 + 23011544 ------------UUAAAUCACUGCGUUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGGACACGCCCCCUGGUCGAAGUUACGGUUCCCGCCCACUCCGGUUCACAGC- ------------........(((.(..((((((..((((((((((.((.((....---..)).)).)))))))))).))))(.(((..(((...)))...))).)))..).))).- ( -35.90, z-score = -1.91, R) >droSim1.chr2L 16764109 100 + 22036055 ------------UUAAAUCACUGCGUUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGGACACGCCCCCUGGUCGAAGUUACGGUUCCCGCCCACUCCGGUUCACAGC- ------------........(((.(..((((((..((((((((((.((.((....---..)).)).)))))))))).))))(.(((..(((...)))...))).)))..).))).- ( -35.90, z-score = -1.91, R) >droSec1.super_7 711732 100 + 3727775 ------------UUAAAUCACUGCGUUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGGACACGCCCCCUGGUCGAAGUUACGGUUACCGCCCACUCCGGUUCACAGC- ------------........(((.(..((((((..((((((((((.((.((....---..)).)).)))))))))).))))(.(((..(((...)))...))).)))..).))).- ( -35.90, z-score = -2.02, R) >droYak2.chr2R 17119604 100 - 21139217 ------------UUAAAUCACUACGUUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGGACACGCCCUCUGGCCGAAGUUACGGUUCCCGCCCACUCCGGUUCGCAGC- ------------...............(((.....((((((((((.((.((....---..)).)).)))))))))).(((((.(((..(((...)))...))).)))))..))).- ( -30.40, z-score = -0.34, R) >droEre2.scaffold_4845 15430739 100 - 22589142 ------------UUAAAUCACUGCCCUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGGACACGCCCCCUGGACGAAGCUACGGUUGCCGCCCACUCCGGUUCACAAG- ------------.................((((..((((((((((.((.((....---..)).)).))))))))))(((.((.(((....)))..)).)))....))))......- ( -34.70, z-score = -2.04, R) >droAna3.scaffold_12916 12412031 88 - 16180835 ------------UUAAAUCAUUGCGCUCUGACCUCGGGGGCGUGUGUAAUUGAUU---UUGAAUGACCACGCCCUC-GCCUGAAGUUACGGUUGCCGCCCACUC------------ ------------..........(((((.((((..((((((((((.((.(((....---...))).)))))))))))-)......)))).)).))).........------------ ( -24.40, z-score = -0.74, R) >dp4.chr4_group3 250136 99 - 11692001 ------------UUAAAUCAUUGCAUCCUGACCUCGGGGGCGUGUGUAAUUGUUU---UUGAAUGGACACGCCCAC--GCCAGCACGCACUCGCACUGCCAUCCCGGUGCAUAGGG ------------.........(((..((((....))))((((((.((...(((((---......))))).)).)))--))).....)))...((((((......))))))...... ( -30.80, z-score = -0.21, R) >droPer1.super_8 1290323 99 - 3966273 ------------UUAAAUCAUUGCAUCCUGACCUCGGGGGCGUGUGUAAUUGUUU---UUGAAUGGACACGCCCAC--GCCAGCACGCACUCGCACUGCCAUACUGGUGCAUAGGG ------------..............((((.......((((((((.((.((....---..)).)).)))))))).(--(((((...(((.......)))....))))))..)))). ( -30.10, z-score = -0.29, R) >droWil1.scaffold_180703 1061685 104 + 3946847 UCGUGGAGAGCUCUAAAUCAUUGAGCUCUGACCU-GGGGGCGUAUAUAAUUGUUU---UUGAAUUGUCACGCCCUCUGGUCCA-GCUGCA--UCACGCCCAAACAACAACA----- .((((((((((((.........)))))))((((.-((((((((..((((((....---...)))))).)))))))).))))..-......--)))))..............----- ( -38.30, z-score = -3.99, R) >droMoj3.scaffold_6500 4991821 91 + 32352404 ------------UUAAAUCAUUUCACAUUCGCUC-GGGGGCGUUUAUAAUUGUUGUCGCUGCCCUGCCACGCCCAC-AAUGGCCCUAACAAAUUAUGCGGAAAUU----------- ------------...............(((((..-(((((((...((....))...)))).))).((((.......-..)))).............)))))....----------- ( -17.80, z-score = 1.06, R) >droVir3.scaffold_13246 1745733 88 - 2672878 ------------UUAAAUCAUUGAACCAUUGGCC-GAGGGCGUUUAUAAUUGUUG---GUCAUUUGCCACGCCUUC-GCUUGCCACAACGAAUUAUUCGCAAAUU----------- ------------........(((......(((((-((((((((...(((.((...---..)).)))..))))))))-)...))))...(((.....))))))...----------- ( -20.30, z-score = -0.69, R) >droGri2.scaffold_15165 630 81 + 1906 ------------UUAAAUCAUUGAAUGUUCGUCU-G-GGGCGUUUAUAAGUGUUG---UCGAUUUGCCA------A-AAUAAAUAACACGAUUCCAGCGCAAAUU----------- ------------...((((..(((((((((....-.-)))))))))...((((((---(..((((....------)-)))..)))))))))))............----------- ( -17.60, z-score = -1.28, R) >consensus ____________UUAAAUCAUUGCGUUCUGACCUCGGGGGCGUGUGUAAUUGAUU___UUGAAUGGACACGCCCCC_GGUCGAAGUUACGGUUCCCGCCCACUCCGGUUCA_AG__ ...................................((((((((.........................))))))))........................................ (-10.21 = -10.75 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:06 2011