| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,078,631 – 17,078,729 |
| Length | 98 |
| Max. P | 0.919831 |
| Location | 17,078,631 – 17,078,729 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 64.10 |
| Shannon entropy | 0.73242 |
| G+C content | 0.41392 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -9.38 |
| Energy contribution | -9.31 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17078631 98 - 23011544 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCA--CGACCCGGAAUUUUUCAGAUAACGAGCAGGAAAAAAUUCCAGUCGAAU----------------- ......((--(.((((((((.(((......))))))))))))))........--((((..((((((((((.............).))))))))).))))...----------------- ( -22.62, z-score = -1.88, R) >droSim1.chr2L 16762616 98 - 22036055 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCG--CGACCCGGAAUUUUUCAGAUAACGAGCAGGAAAAAAUUCCAGUCGAAU----------------- ......((--(.((((((((.(((......))))))))))))))........--((((..((((((((((.............).))))))))).))))...----------------- ( -22.32, z-score = -1.55, R) >droSec1.super_7 710438 98 - 3727775 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCG--CCACCCGGAAUUUUUCAGAUAACGAGCAGGAAAAAAUUCCAGUCGAAU----------------- .....(((--(..(.((((((((..(((.(((((....)))))......(((--.....))).)))..)))))))).)..))))..................----------------- ( -19.90, z-score = -0.95, R) >droYak2.chr2R 17118019 98 + 21139217 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCG--CGACCCGGAAUUUUUCAGAUAACGAGCAGCAAAAAAUUCCAGUCGAAU----------------- ......((--(.((((((((.(((......))))))))))))))........--((((..(((((((((................))))))))).))))...----------------- ( -22.29, z-score = -1.85, R) >droEre2.scaffold_4845 15429195 97 + 22589142 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCG--CGACCCGGAAUUUUUCAGAUAACGAGCAGG-AAAAAUUCCAGUCGAAU----------------- ......((--(.((((((((.(((......))))))))))))))........--((((..((((((((((.............)-))))))))).))))...----------------- ( -26.12, z-score = -2.89, R) >droAna3.scaffold_12916 12410890 87 + 16180835 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCGAACGGACCG--CGACCCGGAAUGCUUCAGAUAAGGCAU----GGGAGUUCAG------------------------ ........--(.((((((((.(((......))))))))))))((((...(((--.....))).((((((......))))))----....))))..------------------------ ( -21.30, z-score = -0.25, R) >dp4.chr4_group3 248564 92 + 11692001 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAGACGGACCG--CGUCCGGGUACGCUUC-GCCAAAGAAUAA--AAGAGCUCCACUCG-------------------- ..((((((--(.((((((((.(((......)))))))))))))..(((((..--.))))))))))..(((-......)))...--..(((.....))).-------------------- ( -24.10, z-score = -1.25, R) >droPer1.super_8 1288759 92 + 3966273 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAGACGGACCG--CGUCCGGGUACGCUUC-GCCAAAGAAUAA--AAGAGCUCCACUCG-------------------- ..((((((--(.((((((((.(((......)))))))))))))..(((((..--.))))))))))..(((-......)))...--..(((.....))).-------------------- ( -24.10, z-score = -1.25, R) >droWil1.scaffold_180703 1060175 80 - 3946847 AAGUACUUGUGUCUAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAAG--------AGGUCCACCAUUUGGAAAAUAAAAAAACCCGCUU------------------------------- ((((.(((.((.((((((((.(((......)))))))))))))..)--------)).((((.....))))..............))))------------------------------- ( -13.40, z-score = -0.43, R) >droVir3.scaffold_13246 1744459 102 + 2672878 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAGCG----------GCUCGCAACAGUCCGAA-AUAAA-AACCUAGCCGAAUGC-CCGGACCGUGGCCGAGUGCAU-- ..((((((--(.((((((((.(((......))))))))))))).((----------((.(((....(((((..-.....-...............-.))))).))))))))))))..-- ( -30.40, z-score = -1.88, R) >droMoj3.scaffold_6500 4990432 116 - 32352404 AAGUACUU--GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAGCACAGCAGACGCGACAGCAACAACAAUAA-AUAGACAACCCGCCCGAUUGCAACGAAGCGUAGUCAAGUGCAUAG ..((((((--(((.((((((((.....(((((((....))))).))...)))))((....))..........)-)).))).........((((((........)))))))))))).... ( -25.80, z-score = -0.60, R) >droGri2.scaffold_15252 16277485 102 - 17193109 AAGUACUU--GCCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCACGG------------CGACUGUAGUGCAAAUAUAAAUGCCCAGACAGAGUGCAUUGAAA-GUUUUUGUUUUCCU-- ..((((((--......((((((......((((((....))))))((------------((..((((.......))))..))))))))))))))))...((((-(......)))))..-- ( -23.60, z-score = -0.93, R) >consensus AAGUACUU__GUCCAUUGUUUGAUUAAUGUGUCAAUAAUGGCAAACAGACCG__CGACCCGGAAUUUUUCAGAUAAAGAGCAGCAAAAAGUUCCAGUCGAAU_________________ ..........(.((((((((.(((......))))))))))))............................................................................. ( -9.38 = -9.31 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:05 2011