| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,064,079 – 17,064,130 |
| Length | 51 |
| Max. P | 0.560992 |
| Location | 17,064,079 – 17,064,130 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 95.42 |
| Shannon entropy | 0.07713 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -14.59 |
| Energy contribution | -14.03 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17064079 51 - 23011544 CGCGGACGGUUGUGGAGACAAAAGCCGAUGCCCGAGGGUCAUGUGAUUACC (((...(((((.((....))..)))))(((((....)).))))))...... ( -15.20, z-score = -1.05, R) >droYak2.chr2R 17101487 51 + 21139217 CGUGGACGGCUGUGGAGACAAAAGCCGAUGCCCGAGGGUCAUGUGAUCACC .((((.(((((.((....))..)))))(((((....)).)))....)))). ( -18.40, z-score = -1.84, R) >droSec1.super_7 695991 51 - 3727775 CGCGGAUGGUUGUGGAGACAAAAGCCGAUGCCCGAGGGUCAUGUGAUUACC (((...(((((.((....))..)))))(((((....)).))))))...... ( -13.20, z-score = -0.59, R) >droSim1.chr2L 16747703 51 - 22036055 CGCGGACGGUUGUGGAGACAAAAGCCGAUGCCCGAGGGUCAUGUGAUAACC (((...(((((.((....))..)))))(((((....)).))))))...... ( -15.20, z-score = -1.19, R) >consensus CGCGGACGGUUGUGGAGACAAAAGCCGAUGCCCGAGGGUCAUGUGAUUACC (((...(((((.((....))..)))))(((((....)).))))))...... (-14.59 = -14.03 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:03 2011