| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,062,314 – 17,062,370 |
| Length | 56 |
| Max. P | 0.699867 |
| Location | 17,062,314 – 17,062,370 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 94.11 |
| Shannon entropy | 0.10767 |
| G+C content | 0.40714 |
| Mean single sequence MFE | -12.92 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.14 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17062314 56 + 23011544 AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAGCUGUAUCCCAUAUCCUAGUCG ....((((((((((((.((...((.....))...))))).)))))).)))...... ( -13.10, z-score = -1.47, R) >droSim1.chr2L 16745888 56 + 22036055 AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAGCUGCAUCCCAUAUCCGAGUCG ...((((((((((....((...((.....))...))....)))))).))))..... ( -13.80, z-score = -1.66, R) >droSec1.super_7 694193 56 + 3727775 AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAGCUGCAUCCCAUAUCCGAGUCG ...((((((((((....((...((.....))...))....)))))).))))..... ( -13.80, z-score = -1.66, R) >droYak2.chr2R 17099700 56 - 21139217 AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAGCUGUGUGCCAUAUCCUAGUCA .....((.(((((.((((...((......))...((.....))))))))))).)). ( -9.70, z-score = -0.08, R) >droEre2.scaffold_4845 15413223 56 - 22589142 AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAACUGUUUCCCAUAUCCCAGUCG ....((((((((((...((...((.....))...))...))))))).)))...... ( -14.20, z-score = -1.46, R) >consensus AAAUGGAAUGGGAAUAUGUAAGGGGAAAACUAAAGCUGUAUCCCAUAUCCGAGUCG ....(((((((((....((...((.....))...))....)))))).)))...... (-12.10 = -12.14 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:02 2011