| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,049,194 – 17,049,311 |
| Length | 117 |
| Max. P | 0.577862 |
| Location | 17,049,194 – 17,049,311 |
|---|---|
| Length | 117 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.39 |
| Shannon entropy | 0.62570 |
| G+C content | 0.38557 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -10.74 |
| Energy contribution | -11.26 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577862 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 17049194 117 - 23011544 UGGCCAAUAAAUUAGCGCAAGUAAUUUGCGCAAUUAACUAAAAACAGUUAAAACCGCUAUUUGUUCGGUUAGCGAAA-UCGCUCGAUACAGCAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((..(((.((....)).((((((((..((((((......))))))....(((......(((...((((...-.)))))))...))).))))))))..)))..)))))).... ( -34.30, z-score = -2.40, R) >droAna3.scaffold_12916 3800622 101 - 16180835 UGGCCAAUAAAUUAGCGCAAGUAAUUUGCGCAAUUAACUAAAAAUAGUUGAAACCGCCAUUAGUUGGGC-----------------UGCAGCGGCGCAAAUGCAAUGAAUUGGCCAUA ((((((((..(((.((....)).((((((((..(((((((....)))))))...(((...(((.....)-----------------))..)))))))))))..)))..)))))))).. ( -35.10, z-score = -2.76, R) >droEre2.scaffold_4845 15400338 110 + 22589142 UGGCCAAUAAAUUAGCGCAAGUAAUUUGCGCAAUUAACUAA--------AAAACCGCUAUUUGUUUGGUUAGCGAAAAUCGCUCUAUGCAGCAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((..(((.((....)).((((((((..........--------.....(((((..........)))))......(((......))).))))))))..)))..)))))).... ( -30.40, z-score = -1.16, R) >droYak2.chr2R 17086533 118 + 21139217 UGGCCAAUAAAUUAGCGCAAGUAAUUUGCGCAAUUAACUAAAAACAGCUAAAACCGAUAUUUAUUUGGUUAGCGAAAGUCGCCCCUUGCAACAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((..(((.((....)).((((((((...............((((..(((((.......)))))))))....((.((.....)).)).))))))))..)))..)))))).... ( -32.90, z-score = -2.23, R) >droSec1.super_7 681169 117 - 3727775 UGGUCAAUAAAUUAACGCAAGUAAUUUGAGCAAUUAACUAAAAACAGUUAAAACCGCUAUUUGUUCGGUUAGCGAAA-UCGCUCGAUGCAGCAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((((((((.(....)))))))..(((.((((((......))))))..(((((..(((((((...((((...-.))))))).)))).)))).)..))).....)))))).... ( -28.30, z-score = -0.96, R) >droSim1.chr2L 16731717 117 - 22036055 UGGUCAAUAAAUUAGCGCAAGUAAUUUGAGCAAUUAACUAAAAACAGUUAAAACCGCUAUUUGUUCGGUUAGCGAAA-UCGCUCGAUGCAGCAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((((((((.(....)))))))..(((.((((((......))))))..(((((..(((((((...((((...-.))))))).)))).)))).)..))).....)))))).... ( -28.30, z-score = -0.54, R) >dp4.chr4_group3 11488822 104 - 11692001 UGGCCAAUAAAUUAGCGCAAGUAAUUUGUGCAAUUAACUAAAAACAGUAAAAACCGCUAUUAGUUCU-----------CGAUUCUAUGCGCGAAUGCA---GCAAUCCAUUGGCCAUA ((((((((......(((((((...)))))))........................(((....((((.-----------((........)).))))..)---)).....)))))))).. ( -25.80, z-score = -2.19, R) >droPer1.super_8 2724674 104 - 3966273 UGGGCAAUAAAUUAGCGCAAGUAAUUUGUGCAAUUAACUAAAAACAGUAAAAACCGCUAUUAGUUCU-----------CGAUUCUAUGCGCGAAUGCA---GCAAUCCAUUGGCCAUA (((.((((......(((((((...)))))))........................(((....((((.-----------((........)).))))..)---)).....)))).))).. ( -21.20, z-score = -0.18, R) >droVir3.scaffold_13246 1672147 113 + 2672878 UAGUCCAUAAAUAAGCCCAAGUUAUUUGUGCAAUUAACUAAAACAC---AAAAAAGGGUGCCCAUUAGCCAUGGGCUUAAGCCAAAUGCACCGAGCCG--GCUAAUAAAUUGCCAACA ...........((((((((.((((((((((.............)))---)))...((....))..))))..))))))))((((....((.....)).)--)))............... ( -25.12, z-score = -0.28, R) >droGri2.scaffold_15252 16215483 112 - 17193109 UAGUCAAUAAAU-AGCGCAAGUAAUUUGUGCAUUUAAUUAGAACUA---AAAAAAGAUAAGCCAUUACCCAUAGUCUUAACCCAAAUGCACUGAGGCG--CCCAAUAAAUUUGCAAGC ..(((...((((-.((....)).))))((((((((..(((..((((---......................))))..)))...))))))))...))).--.................. ( -16.95, z-score = -0.32, R) >consensus UGGCCAAUAAAUUAGCGCAAGUAAUUUGCGCAAUUAACUAAAAACAGUUAAAACCGCUAUUUGUUCGGUUAGCGAAA_UCGCUCGAUGCAGCAGCGCGAAUGCAAUGAAUUGGCAAUA ..((((((......(((((((...))))))).......................................................(((......)))..........)))))).... (-10.74 = -11.26 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:01 2011