| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,047,242 – 17,047,333 |
| Length | 91 |
| Max. P | 0.954058 |
| Location | 17,047,242 – 17,047,333 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 77.25 |
| Shannon entropy | 0.43243 |
| G+C content | 0.52173 |
| Mean single sequence MFE | -31.85 |
| Consensus MFE | -18.98 |
| Energy contribution | -18.73 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17047242 91 + 23011544 GGGACCUACAUGACCAGACAGCACUUUUUGGCCGGUCUGGCGGAGUGGCGAUUCUGAAAGCCAUUCCUUUUUUCCUCAUCUAA---AGGUUCCU (((((((..((((((((((.((.(.....)))..)))))).((((((((..........))))))))........))))....---))))))). ( -36.00, z-score = -3.63, R) >droPer1.super_8 2721833 85 + 3966273 GGCGCCUACAUAAGGCUGCAGCGUCGUUGG---AGCCCAGCAGGGA------UCUUAAAGCGUUUCUUUUUGACCUUAACUGGCUGGGGCACGU .(.((((......((((.((((...)))).---))))((((((((.------((..((((.....))))..)))))).....)))))))).).. ( -27.20, z-score = 0.12, R) >droEre2.scaffold_4845 15398327 90 - 22589142 -GGGCCUACAUGAGCUGACAGCACCUUCUGGUCGGUCUGGCGGAGUGGCGAUUCUGAAAACCAUUCCUCUUCUCCUCAUCCAA---AGGUUCCU -((((((..(((((..(((((.(((........))))))..(((((((............)))))))...))..)))))....---)))))).. ( -26.60, z-score = -0.30, R) >droYak2.chr2R 17084532 91 - 21139217 GGGGCCUACAUGAGUGAACAGCACCUUCUGGCAGGUCUGGCGGAGGGGCGAUUCUGAAAACCAUUCCUCUUUUCCUCAUCUAA---AGGUUCCU (((((((..(((((.(((..((.(((((((.((....)).)))))))))..))).(((((.........))))))))))....---))))))). ( -32.00, z-score = -1.30, R) >droSec1.super_7 679219 91 + 3727775 GGGACCUACAUGACCAGACAGCACUUUUUGGCCGGUCUGGCGGAGUGGCGAUUCUGAAAACCAUUCCUCUUUUCCUCAUCUAA---AGGUUCCU (((((((..((((((((((.((.(.....)))..)))))).(((((((............)))))))........))))....---))))))). ( -31.30, z-score = -2.48, R) >droSim1.chr2L 16728804 91 + 22036055 GGGACCUACAUGACCAGACAGCACUUUUUGGCUGGUCUGGCGGAGUGGCGAUUCUUAAAGCCAUUCCUCUUUUCCUCAUCUAA---AGGUUCCU (((((((..(((((((((((((.(.....)))).)))))).((((((((..........))))))))........))))....---))))))). ( -38.00, z-score = -4.59, R) >consensus GGGACCUACAUGACCAGACAGCACCUUUUGGCCGGUCUGGCGGAGUGGCGAUUCUGAAAACCAUUCCUCUUUUCCUCAUCUAA___AGGUUCCU (((((((...........(((.(((........))))))..(((((((............)))))))...................))))))). (-18.98 = -18.73 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:00 2011