| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,651,231 – 1,651,313 |
| Length | 82 |
| Max. P | 0.854273 |
| Location | 1,651,231 – 1,651,313 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 88.09 |
| Shannon entropy | 0.20241 |
| G+C content | 0.50161 |
| Mean single sequence MFE | -21.38 |
| Consensus MFE | -16.98 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1651231 82 - 23011544 AAGCAACCGCGAAACUUCAACACGUCCGUUCAACACGGCAGUUUCU----UUUUGACUGCCGAUUCGAUUUCGAUUCCAACAGGCG ..((....))............((((.(((......(((((((...----....)))))))((.(((....))).)).))).)))) ( -21.00, z-score = -2.01, R) >droEre2.scaffold_4929 24425692 78 + 26641161 --------GCGACACUUCAACACGUCCGCCCAGCACGGCAGUUUCUGGCGUUUUGACUGCCGAUUCGAUUUCGAUUCGAACAGGCG --------..(((..........)))((((.....((((((((...........)))))))).(((((.......)))))..)))) ( -22.70, z-score = -1.04, R) >droYak2.chr2L 1626702 77 - 22324452 -----CUAGCGACACUUCAACACGUCCGUUCAACACGGCAGUUUCU----UUUUGACUGCCUAUUCGAUUUCGAUUCGAACAGGCG -----.................((((.((((.....(((((((...----....)))))))...(((....)))...)))).)))) ( -21.80, z-score = -3.37, R) >droSec1.super_14 1593841 82 - 2068291 AAGCAACCGCGAAACUUCAACACGUCCGUUCAACACGGCAGUUUCU----UUUUGACUGCCGAUUCGAUUUCGAUUCCAACAGGCG ..((....))............((((.(((......(((((((...----....)))))))((.(((....))).)).))).)))) ( -21.00, z-score = -2.01, R) >droSim1.chr2L 1685196 82 - 22036055 AAGCAACCGCGAAACUUCAACACGUCCGUUCAACACGGCAGUUUCU----UUUUGACUGCCGAUUCGUUUUCGAUUCCAACAGGCG ..((....))............((((.(((......(((((((...----....)))))))((.(((....))).)).))).)))) ( -20.40, z-score = -1.74, R) >consensus AAGCAACCGCGAAACUUCAACACGUCCGUUCAACACGGCAGUUUCU____UUUUGACUGCCGAUUCGAUUUCGAUUCCAACAGGCG ......................((((.(((......(((((((...........)))))))((.(((....))).)).))).)))) (-16.98 = -17.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:52 2011