| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,034,221 – 17,034,312 |
| Length | 91 |
| Max. P | 0.513417 |
| Location | 17,034,221 – 17,034,312 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 91.06 |
| Shannon entropy | 0.15166 |
| G+C content | 0.53141 |
| Mean single sequence MFE | -36.46 |
| Consensus MFE | -29.25 |
| Energy contribution | -28.93 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17034221 91 - 23011544 GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGAGGUUAGUUGCGUGUGAGCGAACGC------------------GAGCGCGCUUCAGACAAAUUAAA ((((((((((.(((((....))))).)))).))))))........(((.(..((((((..((....))------------------..))))))..).)))........ ( -34.60, z-score = -1.68, R) >droEre2.scaffold_4845 15385536 97 + 22589142 GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGACGUUAGUUGCGUGUGAGCGAACGCAAACGC------------GAACGCGCUGCAGACAAAUUAAA ((((((((((.(((((....))))).)))).))))))........(((.((.((((((..(((........)))------------..)))))).)).)))........ ( -38.10, z-score = -1.97, R) >droYak2.chr2R 17070404 109 + 21139217 GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGAGGUUAGUUGCGUGUGAGCGAACGCGAACGCAAACGCGAACGGGAACGCGCUUCAGACAAAUUAAA ((((((((((.(((((....))))).)))).)))))).........((((((..((.((((((..((((........))))..((....))))).))).)).)))))). ( -38.10, z-score = -1.11, R) >droSec1.super_7 665997 97 - 3727775 GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGAGGUUAGUUGCGUGUGAGCGAACGCAAACGC------------GAACGCGCUUCAAACAAAUUAAA ((((((((((.(((((....))))).)))).)))))).....(((((..(((.(((((..((....))..))))------------))))..)))))............ ( -35.70, z-score = -1.95, R) >droSim1.chr2L 16716033 97 - 22036055 GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGAGGUUAGUUGCGUGUGAGCGAACGCAAACGC------------GAACGCGCUUCAGACAAAUUAAA ((((((((((.(((((....))))).)))).))))))........(((.(..((((((..(((........)))------------..))))))..).)))........ ( -35.80, z-score = -1.80, R) >consensus GCAGGUGGGCAGGUGGCAUUUCGCCAGCUCAACUUGCUUAACGAGGUUAGUUGCGUGUGAGCGAACGCAAACGC____________GAACGCGCUUCAGACAAAUUAAA ((((((((((.(((((....))))).)))).))))))........(((.(..((((((..((....))....................))))))..).)))........ (-29.25 = -28.93 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:59 2011