| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,021,883 – 17,021,973 |
| Length | 90 |
| Max. P | 0.900541 |
| Location | 17,021,883 – 17,021,973 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 69.20 |
| Shannon entropy | 0.57906 |
| G+C content | 0.34405 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -7.88 |
| Energy contribution | -7.30 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17021883 90 - 23011544 AGAACCCAUAUUUAGUUUUAAUUGAUGUAGUUUUUCUCUCGGCGUAGAACAGCCUGU------UUUAUUAACGGCUACAUCAACAGCAUCCAAAGC .....................(((((((((((........(((........))).((------(.....))))))))))))))............. ( -17.60, z-score = -1.57, R) >droSim1.chr2L 16703841 90 - 22036055 AAAUACCCUAUUUAGUUUUAAUUGGUGUAGUUUUUCUCUCUGCGUAAAACAGCCUGU------UUUAUUAACGGCUACAUCAACAGCAUCCCAAGC .....................(((((((((((((.(.......).))))).(((.((------(.....))))))))))))))............. ( -13.80, z-score = -0.54, R) >droSec1.super_7 654035 90 - 3727775 AAACACCCUAUUUAGUUUUAAUUGAUGUAGUUUUUCUCUCUGCGUAAAACAGCCUGU------UUUAUUAACGGCUACAUCAACAGCAUCCCAAGC .....................(((((((((((((.(.......).))))).(((.((------(.....))))))))))))))............. ( -14.40, z-score = -1.30, R) >droYak2.chr2R 17054770 90 + 21139217 CAAAAACUUAUUUAGUUUUAAUUGAUGUAGUUUUUCUCUCUGUGUAAAACAGCCUGU------UUUAUUAACGGCUACAUCAACAGCAUCCAAAGC ..((((((.....))))))..(((((((((.........((((.....)))).((((------(.....))))))))))))))............. ( -18.60, z-score = -2.52, R) >droEre2.scaffold_4845 15373887 79 + 22589142 ----------AAAAAACGUAGUU-AUGUAGUUUUUCUCUCUGCGUAAAACAGCCUGU------UUUAUUAACGGCUACAUCAACAGCAUCCAAAGC ----------.......((..((-((((((.........)))))))).))((((.((------(.....))))))).................... ( -13.00, z-score = -1.02, R) >triCas2.chrUn_1 364890 72 + 1280983 ----------------------CGACGAAUUAUUUAGCACUAAAUUGUACGGUUUAUGUAUUAUUGAUUGAUAAUUAGGUCAAUAGUAAGUUAA-- ----------------------...........(((((..((((((....))))))..(((((((((((........))))))))))).)))))-- ( -11.80, z-score = -0.89, R) >consensus AAA_ACC_UAUUUAGUUUUAAUUGAUGUAGUUUUUCUCUCUGCGUAAAACAGCCUGU______UUUAUUAACGGCUACAUCAACAGCAUCCAAAGC .....................(((((((.(((((...........)))))((((..................)))))))))))............. ( -7.88 = -7.30 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:58 2011