| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,997,812 – 16,997,902 |
| Length | 90 |
| Max. P | 0.717205 |
| Location | 16,997,812 – 16,997,902 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Shannon entropy | 0.43549 |
| G+C content | 0.48940 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.57 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16997812 90 + 23011544 -------------------GAAAUCGGGGCAGGGGCACUCACCAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- -------------------......(((((....)).)))...(((((((...(..(((((((.((((((.........)))))))))).))--)..)...)))))))...- ( -27.30, z-score = -1.39, R) >droEre2.scaffold_4845 15350275 90 - 22589142 -------------------GAAAUCGGGGCAGGGGCAUUCACCAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- -------------------......((.((....)).....))(((((((...(..(((((((.((((((.........)))))))))).))--)..)...)))))))...- ( -25.70, z-score = -0.98, R) >droYak2.chr2R 17030146 89 - 21139217 -------------------GAAAUCGGG-CAGGGGCACUCACCAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCGCAACAAUGGC--CUAAGUACGUUGAUAGA- -------------------......((.-.((.....))..))(((((((...(..(((((((.((((((.........)))))))))).))--)..)...)))))))...- ( -25.70, z-score = -0.59, R) >droSec1.super_7 629542 90 + 3727775 -------------------GAAAUCGGGGCAGGGGCACUCACCAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- -------------------......(((((....)).)))...(((((((...(..(((((((.((((((.........)))))))))).))--)..)...)))))))...- ( -27.30, z-score = -1.39, R) >droSim1.chr2L 16678299 90 + 22036055 -------------------GAAAUCGGGGCAGGGGCACUCACCAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGCUAGA- -------------------......(((((....)).))).....(((((...(..(((((((.((((((.........)))))))))).))--)..)...))))).....- ( -23.80, z-score = 0.19, R) >droPer1.super_8 1179430 97 - 3966273 ------------GGGUGGGAGGAAGGGAGGACUACCAGCGGCUAUCAGCGGCAUCGAGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- ------------.(((((.............))))).....(((((((((..((..((.((((.((((((.........))))))))))...--))..)).))))))))).- ( -28.22, z-score = -1.08, R) >droAna3.scaffold_12916 12334024 87 - 16180835 ----------------------GGGGAUAGGGGAUGAGGUGCUAUCAGUGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- ----------------------..........((((.(((((((....)))))))((.(((((.((((((.........))))))))))).)--)......))))......- ( -24.70, z-score = -1.58, R) >droWil1.scaffold_180703 1163848 88 + 3946847 ---------------------AGUACCACAAGGAGCACAGGCUAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC--CUAAGUACGUUGAUAGA- ---------------------.((.((....)).)).....(((((((((...(..(((((((.((((((.........)))))))))).))--)..)...))))))))).- ( -29.70, z-score = -2.58, R) >droVir3.scaffold_13246 1031525 79 + 2672878 --------------------------------GGGCGGGG-CUAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGCGCCUAAGUACGUUGAUAGAA --------------------------------........-(((((((((...(..(((((((.((((((.........))))))))...)))))..)...))))))))).. ( -28.70, z-score = -2.75, R) >droMoj3.scaffold_6500 27481435 94 - 32352404 ----------------GAAGCCGAGUGAGAGAUGUAGGGU-CUAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGCGCCUAAGUACGUUGAUAGA- ----------------....((...(....).....)).(-(((((((((...(..(((((((.((((((.........))))))))...)))))..)...))))))))))- ( -30.20, z-score = -2.01, R) >droGri2.scaffold_8570 1005 111 + 4001 AAAAUGUACCGAAUCAAAGGCAGUAUUUGGGGGGAAAGGAGCUAUCAGCAGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGCGCCUAAGUGCGUUGAUAGA- ........(((((((.......).))))))...........((((((((.((((.((((((((.((((((.........))))))))...))))))..)))))))))))).- ( -33.50, z-score = -1.99, R) >consensus ___________________GAAAUCGGGGCAGGGGCACUCACUAUCAGCGGCAUCGGGUGUUGAUUGUGCUAAAUAACUGCACAACAAUGGC__CUAAGUACGUUGAUAGA_ ...........................................(((((((((....(.(((((.((((((.........))))))))))).)......)).))))))).... (-16.46 = -16.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:56 2011