| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,994,407 – 16,994,501 |
| Length | 94 |
| Max. P | 0.561270 |
| Location | 16,994,407 – 16,994,501 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 95.86 |
| Shannon entropy | 0.07732 |
| G+C content | 0.35978 |
| Mean single sequence MFE | -20.24 |
| Consensus MFE | -19.31 |
| Energy contribution | -19.34 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16994407 94 + 23011544 ---UAUACUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ---.............((..((..(((((((((.............)))))))))(((((((....)))))))))..)).................. ( -20.82, z-score = -1.26, R) >droAna3.scaffold_12916 12330383 97 - 16180835 CUGUACUUUUUUUUAUUAUUGCCGGCAGUGUCAUAAUAUCUCGCCUUGACGCUGGGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ...................(((((.((((((((.............))))))))...)))))................................... ( -17.32, z-score = -0.28, R) >droEre2.scaffold_4845 15346854 94 - 22589142 ---CAUACUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ---.............((..((..(((((((((.............)))))))))(((((((....)))))))))..)).................. ( -20.82, z-score = -1.18, R) >droYak2.chr2R 17026737 94 - 21139217 ---UAUACUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ---.............((..((..(((((((((.............)))))))))(((((((....)))))))))..)).................. ( -20.82, z-score = -1.26, R) >droSec1.super_7 626134 94 + 3727775 ---UAUAUUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ---.............((..((..(((((((((.............)))))))))(((((((....)))))))))..)).................. ( -20.82, z-score = -1.31, R) >droSim1.chr2L 16674873 94 + 22036055 ---UAUAUUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ---.............((..((..(((((((((.............)))))))))(((((((....)))))))))..)).................. ( -20.82, z-score = -1.31, R) >consensus ___UAUACUUUUUUAUUGUUGCUGGCAGUGUCAUAAUAUCUCGCCUUGGCGCUGCGAUGGCAUUCAUGUCGUUGCUUCAUUUUAUUGUUAUUAUAUU ....................((..(((((((((.............)))))))))(((((((....)))))))))...................... (-19.31 = -19.34 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:55 2011