| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,989,609 – 16,989,718 |
| Length | 109 |
| Max. P | 0.663738 |
| Location | 16,989,609 – 16,989,718 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Shannon entropy | 0.44020 |
| G+C content | 0.37260 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -13.53 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16989609 109 - 23011544 ---ACAAGAUUGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUCCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGA ---....(((((((..((((((((((..(((..((......))..))).)))((((((...(((....)))..))))))..))))))))))))))..((((......)))). ( -25.30, z-score = -1.44, R) >droWil1.scaffold_180703 2761183 104 + 3946847 GCAAUUACUUUAACA-GAAAUGGUGCUCUACAUUUCGAGCAUAAUGUGUCUGAAACUUUCCUGCAUUUCUUAGUAUAGACACAAAUACAUAAGUAUAAGCCCAAA------- ((...(((((...((-....))((((((........))))))..((((((((..(((..............))).)))))))).......)))))...)).....------- ( -21.74, z-score = -2.18, R) >droEre2.scaffold_4845 15342332 109 + 22589142 ---ACAAGAUUGAUGCUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUUCCCAGCUGUUAAGCGUGCGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGA ---....((((((((((((((((((....(((((......))))).....))))...))))))).(((((........))))).....)))))))................. ( -22.80, z-score = -1.09, R) >droYak2.chr2R 17022120 109 + 21139217 ---ACAAGAUUGAUGUUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGA ---....(((((((..(((((((((((.........))))............((((((...(((....)))..))))))..))))))))))))))................. ( -24.00, z-score = -1.93, R) >droSec1.super_7 621709 109 - 3727775 ---ACAAGAUUGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCGGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGA ---....(((((((..((((((((((..(((..((......))..))).)))((((((...(((....)))..))))))..))))))))))))))..((((......)))). ( -24.30, z-score = -0.74, R) >droSim1.chr2L 16670473 109 - 22036055 ---ACAAGAUUGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGA ---....(((((((..((((((((((..(((..((......))..))).)))((((((...(((....)))..))))))..))))))))))))))..((((......)))). ( -25.10, z-score = -1.36, R) >consensus ___ACAAGAUUGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGA ....((.((((((((((((..((((...(((..((......))..)))..))))(((....))).))))).))))))).))............................... (-13.53 = -12.77 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:54 2011