| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,988,752 – 16,988,812 |
| Length | 60 |
| Max. P | 0.992965 |
| Location | 16,988,752 – 16,988,812 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 85.14 |
| Shannon entropy | 0.19896 |
| G+C content | 0.35690 |
| Mean single sequence MFE | -8.77 |
| Consensus MFE | -8.99 |
| Energy contribution | -8.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.06 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.992965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16988752 60 + 23011544 GUUCGGUUAAGCUGAACAAUGGAAAAAAGCAAAAAAUAUACAGAAAACACAAAGGAAUUU ((((((.....))))))........................................... ( -7.30, z-score = -1.97, R) >droEre2.scaffold_4845 15341460 54 - 22589142 GUUCGGUUAAGCCGAACAAUGGG-----GGAAAAAGUA-GCAGAAAACACAAAAGAAUUU ((((((.....))))))......-----..........-..................... ( -9.50, z-score = -2.11, R) >droYak2.chr2R 17021303 55 - 21139217 GUUCGGUUAAGCCGAACAAUGGGA----GGAAAAAAUA-GCAGAAAACACAAAGGAUUUU ((((((.....)))))).......----..........-..................... ( -9.50, z-score = -2.09, R) >consensus GUUCGGUUAAGCCGAACAAUGGGA____GGAAAAAAUA_GCAGAAAACACAAAGGAAUUU ((((((.....))))))........................................... ( -8.99 = -8.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:52 2011