| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,979,924 – 16,980,007 |
| Length | 83 |
| Max. P | 0.990562 |
| Location | 16,979,924 – 16,980,007 |
|---|---|
| Length | 83 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 52.92 |
| Shannon entropy | 0.79526 |
| G+C content | 0.38214 |
| Mean single sequence MFE | -16.90 |
| Consensus MFE | -8.38 |
| Energy contribution | -9.58 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.990562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16979924 83 - 23011544 ------CUCAGCCCCGAUGCGAUACCCUUAGAAAGGGUAUUGUAAUUUG-AGCAUCGAAGAAAGUGGGUUUUCAUAAAAAUAUAUUUUUG---- ------...((((((..(((((((((((.....))))))))))).((((-.....))))....).)))))....................---- ( -21.90, z-score = -2.74, R) >droAna3.scaffold_12916 12318608 64 + 16180835 --------------------------AUCAAGAGUUUUUCAGAAAUUUACAAUCCAUCUACGGAUGAUAUUUUAAUAAAAUAUAUCCAUG---- --------------------------.....(((((((...)))))))......((((....))))((((((.....)))))).......---- ( -7.00, z-score = -0.53, R) >droEre2.scaffold_4845 15332563 79 + 22589142 ------CUCAG-CGCGACGCGAUACCCUCAGAAAGGGUGUUCCGAUUUG-AGCCCCG-AGGUUAUCCUUCUUCAUUAAUGCAUAUAAU------ ------.....-.(((.((.((((((((.....)))))))).))...((-((....(-(((....)))).))))....))).......------ ( -18.20, z-score = -0.66, R) >droYak2.chr2R 17011588 93 + 21139217 CUCAGUCUCAGCCUCGACGCGAUACUCUUGGAAAGGGUAUUGUAAUUUG-AGUCUCGAAAGUAAUCCUUUCUCAUUAGUGAAAAGAAUAAGUGC (((((((........)))((((((((((.....))))))))))....))-))(((.(((((.....)))))(((....)))..)))........ ( -19.50, z-score = -0.26, R) >droSec1.super_7 612172 83 - 3727775 ------CUCAGCCCCGAUGCGAUACCCUCAGAAAGGGUAUUGUAAUUUG-AGCCUCUAAGAAAGUGCUAUUCAAUAAGAAAAUAAUUUCG---- ------(((((......(((((((((((.....)))))))))))..)))-)).......((((......(((.....))).....)))).---- ( -17.90, z-score = -2.03, R) >consensus ______CUCAGCCCCGACGCGAUACCCUCAGAAAGGGUAUUGUAAUUUG_AGCCUCGAAGAAAAUGCUUUUUCAUUAAAAAAUAUAAUUG____ .................(((((((((((.....))))))))))).................................................. ( -8.38 = -9.58 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:51 2011