| Sequence ID | dm3.chr2L |
|---|---|
| Location | 136,632 – 136,733 |
| Length | 101 |
| Max. P | 0.974761 |
| Location | 136,632 – 136,733 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 65.18 |
| Shannon entropy | 0.54351 |
| G+C content | 0.39753 |
| Mean single sequence MFE | -22.24 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.82 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.974761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 136632 101 + 23011544 AUCCUAUAAUUCUAUGUCCUGUGACCGAUGUCCAGCAAUUAAUCGGUCACGUAGCGUCAUUUUGGAAUGAAAAGAAAAAGAAAAGAUUUGCGGCCGCAAAU .........((((.(((..((((((((((............))))))))))..)))(((((....)))))..)))).........((((((....)))))) ( -25.00, z-score = -2.02, R) >droPer1.super_8 239174 87 - 3966273 -----------GCAUGUCCUGUGACUGAUGUGCAAAAAUAAAUUUUUCACGUAUCGUGUUUAUACAACUCC---UGGGAAGAGUGUCAUUUUUUUAGGAAU -----------(((((((........)))))))..............((((...))))..........(((---((((((((......))))))))))).. ( -19.00, z-score = -1.17, R) >dp4.chr4_group2 162276 87 + 1235136 -----------GCAUGUCCUGUGACUGAUGUGCAAAAAUAAAUUUUUCACGUAUCGUGUUUAUACAACUCC---UGGGAAGAGUGCCAUUUUUUUAGGAAU -----------(((((((........)))))))..............((((...))))..........(((---((((((((......))))))))))).. ( -19.00, z-score = -1.06, R) >droSec1.super_14 135631 83 + 2068291 -----------CUAUGUCCUGUGACCGAUGACCAGCAAUUAAUCGGUCACGUAGCGUCAUUUUGGAA-------AGUUUGAAAAGAUUUGCGGCCGUAAAU -----------.((((.((.(((((((((............)))))))))((((.(((.(((..((.-------..))..))).))))))))).))))... ( -24.10, z-score = -2.39, R) >droSim1.chr2L 139333 83 + 22036055 -----------CUAUGUCCUGUGACCGAUGACCAGCAAUUAAUCGGUCACGUAGCGUCAUUUUGGAA-------AGUUUGAAAAGAUUUGCGGCCGUAAAU -----------.((((.((.(((((((((............)))))))))((((.(((.(((..((.-------..))..))).))))))))).))))... ( -24.10, z-score = -2.39, R) >consensus ___________CUAUGUCCUGUGACCGAUGUCCAGCAAUUAAUCGGUCACGUAGCGUCAUUUUGGAA_______AGGGAGAAAAGAUUUGCGGCCGGAAAU .............((((..((((((((((............))))))))))..))))...............................(((....)))... (-12.14 = -11.82 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:09 2011