| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,963,335 – 16,963,479 |
| Length | 144 |
| Max. P | 0.694163 |
| Location | 16,963,335 – 16,963,479 |
|---|---|
| Length | 144 |
| Sequences | 6 |
| Columns | 144 |
| Reading direction | forward |
| Mean pairwise identity | 73.30 |
| Shannon entropy | 0.50693 |
| G+C content | 0.60536 |
| Mean single sequence MFE | -51.20 |
| Consensus MFE | -25.24 |
| Energy contribution | -28.50 |
| Covariance contribution | 3.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.694163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16963335 144 + 23011544 GGUGCAUCGGCUAUGCGACCAUGUGAGUGGGCGGGUGGUUCCAUGUGGCUUGUUUGCUUAGGCAUCCAAUGCCGAGUGGGCAGAGUGGGCGAGCAGCUGGUGGAGCAGGGGUAACAGACGGAGGAACAGGAGGUGGCGCCAGUG ((((((((.(((((.((.((((....)))).)).)))))(((.(((.(((((((..(((.((...))..((((.....)))))))..)))))))..(((.((..((....))..))..)))....))))))))).))))).... ( -52.00, z-score = -0.02, R) >droSim1.chr2L 16644276 135 + 22036055 GGUGCAUGGACUAUGCGACCAUGUGAGUGGGCGGGUGGUUCCAUGUGGCUUGUUUGCUUAGGCAUCCAAUGCCGAGUGGGC---------GAGCAGCUGGAGGAGCAGGGGCAACAGGCGGAGGAACAGGAGGUGGCUCCAGUG ...(((((((((((.((.((((....)))).)).)))).))))))).(((((((..(((.(((((...))))))))..)))---------)))).(((((((..((...(....)..))(......).........))))))). ( -58.70, z-score = -2.86, R) >droSec1.super_7 595500 135 + 3727775 GGUGCAUGGACUAUGCGACCAUGUGAGUGGGCGGGUGGUUCCAUGUGGCUUGUUUGCUUAGGCAUCCAAUGCCGAGUGGGC---------GAGCAGCUGGAGGAGCAGGGGCAACAGGCGGAGGAACAGGAGGUGGCUCCAGUG ...(((((((((((.((.((((....)))).)).)))).))))))).(((((((..(((.(((((...))))))))..)))---------)))).(((((((..((...(....)..))(......).........))))))). ( -58.70, z-score = -2.86, R) >droEre2.scaffold_4845 15316277 134 - 22589142 GGUGCAUGGACUUUGCGACCAUGUGAGUGGGCGGGUGGCUC-AUGUGGCAUGUUUGCUUAGGCAUCCAAUGCCGAGUGGGC---------GAGGAGCAUGAGUAGCAGGCGGAGCAGGCGGAGGAACUGGAGGUGGCUCCAGUG ..........((((((..((((....))))((..((.((((-((((..(.((((..(((.(((((...))))))))..)))---------).)..)))))))).))..)).......))))))..(((((((....))))))). ( -53.80, z-score = -1.68, R) >droYak2.chr2R 16994954 109 - 21139217 GGUGCAUGGACUUUGCGACCAUGUGAGUGGGCGGGUCGUUCCAUGUGGCUUGUUUGCUUAGGCAUCCAAUGCCGAGUGGCA--------UGAGGAGCCAGAGGAGGUGGCUCCAGUG--------------------------- ...(((((((....((((((.(((......))))))))))))))))(((((.((((((..(((((...)))))....))))--------.)).)))))...((((....))))....--------------------------- ( -44.40, z-score = -1.51, R) >droAna3.scaffold_12916 12302650 123 - 16180835 GGUGCAUGGACUAUGCGACCAUG----UGGGCAUGUGAAUGUGUGCGGCUUGUUUGCUUAGGCAUGAAAUGUCAGG--------------AAGGGGUUGGGGGCGGGGGUUCCUGCCAGGAGGCGGCAGAAGGUUGCAGUG--- .(..(((..((.((((..((...----.))))))))..)))..)(((((((.((((((..(((((...)))))...--------------.....(((...((((((....))))))....))))))))))))))))....--- ( -39.60, z-score = 0.06, R) >consensus GGUGCAUGGACUAUGCGACCAUGUGAGUGGGCGGGUGGUUCCAUGUGGCUUGUUUGCUUAGGCAUCCAAUGCCGAGUGGGC_________GAGCAGCUGGAGGAGCAGGGGCAACAGGCGGAGGAACAGGAGGUGGCUCCAGUG (.((((((((((((.((.((((....)))).)).)))).)))))))).)..(((..(((.(((((...))))))))..)))..............(((((((..................................))))))). (-25.24 = -28.50 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:49 2011