Locus 2197

Sequence ID dm3.chr2L
Location 16,951,284 – 16,951,336
Length 52
Max. P 0.953987
window3036

overview

Window 6

Location 16,951,284 – 16,951,336
Length 52
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 92.23
Shannon entropy 0.13723
G+C content 0.48240
Mean single sequence MFE -14.77
Consensus MFE -14.69
Energy contribution -14.55
Covariance contribution -0.14
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.60
SVM RNA-class probability 0.953987
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16951284 52 - 23011544
-UCCUUUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGG
-........((((((((....))))))))...(((.((((.....)))).))) ( -14.40, z-score =  -1.72, R)
>droEre2.scaffold_4845 15309184 52 + 22589142
-UGCUGUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGG
-........((((((((....))))))))...(((.((((.....)))).))) ( -14.40, z-score =  -1.32, R)
>droYak2.chr2R 16987520 52 + 21139217
-UCCUGCGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGG
-........((((((((....))))))))...(((.((((.....)))).))) ( -14.40, z-score =  -1.23, R)
>droSec1.super_7 588292 52 - 3727775
-UCCUUUGGACAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGCAUCGAAUGG
-........((((((((....))))))))...(((.((((.....)))).))) ( -14.60, z-score =  -1.69, R)
>droSim1.chr3R 11872634 53 - 27517382
UCCUUUCGGACAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGCAUCGAAUGG
.((....))((((((((....))))))))...(((.((((.....)))).))) ( -14.90, z-score =  -1.61, R)
>droAna3.scaffold_12916 12296274 52 + 16180835
-CCUUUUGGGCAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGAAUCGAAUGG
-((....))((((((((....))))))))...(((.((((.....)))).))) ( -15.90, z-score =  -2.12, R)
>consensus
_UCCUUUGGACAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGCAUCGAAUGG
.........((((((((....))))))))...(((.((((.....)))).))) (-14.69 = -14.55 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:48 2011