| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,910,411 – 16,910,520 |
| Length | 109 |
| Max. P | 0.521848 |
| Location | 16,910,411 – 16,910,520 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.30083 |
| G+C content | 0.30573 |
| Mean single sequence MFE | -21.04 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.521848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16910411 109 + 23011544 ----AACUAUAUUAUUUCAUAUCGCCUCCAAGCUUUCAGUAUUUUUUAGCUUUUGCCUAAAAGGGUAACACUAAAAGUGUAGCGGGAACAAUUUAAAUAUUUCAUUAAGAAAC ----......................(((..(((..((....(((((((...((((((....))))))..))))))))).))).)))............((((.....)))). ( -14.20, z-score = 0.52, R) >droSim1.chr2L 16598985 113 + 22036055 AAUCAACUAUAUUAUUUCAUAUCGCCUCCAAGCUUUCAGUAUUUUUUAUCUUUUGCCUGAAAAGGUAACACUAAAAGUGUGGCGGUAACAAUUUAAAUCUUUCUUUAAGUUAC ...................(((((((...........................(((((....)))))((((.....)))))))))))..((((((((......)))))))).. ( -22.60, z-score = -3.04, R) >droSec1.super_7 547565 113 + 3727775 AAUCAACUAUAUUAUUUCAUAUCGCCUCUAAGCUGUCAGUAUUUUUUAGCUUUUGCCUGAAAAGGUAACACUGAAAGUGUGGCGGUAACAAUUUAAAUAUUUCGUUAAGUUAA ...................(((((((...((((((...........)))))).(((((....)))))((((.....)))))))))))..(((((((........))))))).. ( -24.90, z-score = -2.30, R) >droYak2.chr2R 16945212 108 - 21139217 AAUCAACUCUAUUAUUUCAUAUCGCCUGUAAGCUUUUAGUAUUUUUUGGUUUCCGCAUAACAAGGUAACACUGAAAGUUUGGCGGGAAAAGUUUAAAUAUUUUU--UAAC--- .....................(((((...(((((((((((.(((((((............))))).)).))))))))))))))))(((((((......))))))--)...--- ( -20.50, z-score = -1.42, R) >droEre2.scaffold_4845 15267787 113 - 22589142 AGUCAACUAUAUUAUUUCAUAUCGCCUGUAAGCUUUUAGUAUUUUUUGGCUUCUGCGUAAAAAGGUAACACUGAAAGUGUGCCGGGAAAUAUUUAAAUAUUUUUGUUAGUUAC ....(((((...(((((.((((..((((((.(((((((((.(((((((((....)).))))))).....))))))))).)).))))..))))..))))).......))))).. ( -23.00, z-score = -1.14, R) >consensus AAUCAACUAUAUUAUUUCAUAUCGCCUCUAAGCUUUCAGUAUUUUUUAGCUUUUGCCUAAAAAGGUAACACUGAAAGUGUGGCGGGAACAAUUUAAAUAUUUCUUUAAGUUAC .....................(((((.....(((((((((.(((((((((....)).))))))).....)))))))))..)))))............................ (-14.88 = -15.40 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:44 2011