| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,886,800 – 16,886,891 |
| Length | 91 |
| Max. P | 0.992488 |
| Location | 16,886,800 – 16,886,891 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Shannon entropy | 0.47411 |
| G+C content | 0.43632 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -18.90 |
| Energy contribution | -20.02 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16886800 91 - 23011544 GGCAGGUGUAUGUUUAUCUGGGU-CUAUUUCGGAUAUGUCGCAG-UGAUAAAAAGUAUCUAUCAGAUAUUCGGUGCGCCUGCCAACAUGCCCG--- ((((((((((((..(((((((((-((.....)))).((((....-.))))...........)))))))..).)))))))))))..........--- ( -30.90, z-score = -2.87, R) >droSec1.super_7 523939 91 - 3727775 GGCAGGUGUAUGUUUAUCUGGGU-CUAUUUCGGAUAUGUCGCAG-UGAUAAAAAGUAUCUAUCAGAUAUUCGGUGCGCCUGCCAACAUGUCCG--- ((((((((((((..(((((((((-((.....)))).((((....-.))))...........)))))))..).)))))))))))..........--- ( -30.90, z-score = -3.28, R) >droSim1.chr2L 16570709 94 - 22036055 GGCAGGUGUAUGUUUAUCUGGGU-CUAUUUCGGAUAUGUCGCAG-UGAUAAAAAGUAUCUAUCAGAUAUUCGGUGCGCCUGCCAACAUGACCACCG ((((((((((((..(((((((((-((.....)))).((((....-.))))...........)))))))..).)))))))))))............. ( -30.90, z-score = -2.57, R) >droYak2.chr2R 16921126 90 + 21139217 GGCUAGGGUAUGUUUAUCUGGGU-CUAUUUCGGAUGUGUCGCUG-UGAU-AAAAGUAUCUAUCAGAUAUUCGGUUCGCCUGCCAACAUACCCG--- .....(((((((((((((((((.-....))))))))....((.(-(((.-...((((((.....))))))....))))..)).))))))))).--- ( -28.80, z-score = -2.59, R) >droEre2.scaffold_4845 15242066 89 + 22589142 GGCAGGUGUAUGUUUAUCUAGGU-CUAUUUCGGAUAUGUCGCUG-UGAU-AAAAGUAUCUAUCAGAUAUUCGGUACGCCUGCCAACAUACCG---- ((((((((((((..(((((.((.-.....)).((((.(..(((.-....-...)))..))))))))))..).))))))))))).........---- ( -28.30, z-score = -3.01, R) >droGri2.scaffold_15126 2507952 82 + 8399593 ------UGAUUGUUAUUGUUGUUGCUUAUGAAGAGAUAUCACAGCCGAUAAUAAAUGUUGGAUACGUUUGCCAAAUUAUUGCCACGGG-------- ------...(((((((((((((..(((.....))).....)))).)))))))))...((((.........))))..............-------- ( -10.20, z-score = 1.84, R) >consensus GGCAGGUGUAUGUUUAUCUGGGU_CUAUUUCGGAUAUGUCGCAG_UGAUAAAAAGUAUCUAUCAGAUAUUCGGUGCGCCUGCCAACAUGCCCG___ ((((((((((((..(((((((..........(((((((((......))).....)))))).)))))))..).)))))))))))............. (-18.90 = -20.02 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:40 2011