| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,640,501 – 1,640,603 |
| Length | 102 |
| Max. P | 0.594229 |
| Location | 1,640,501 – 1,640,603 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 82.44 |
| Shannon entropy | 0.28451 |
| G+C content | 0.46786 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.12 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1640501 102 + 23011544 AAUUUACUCCCCUUGAGUUCAAGUCAUUCCUUU----------CAAGAGCAGUUCCUUCGACUUACCCCAAAAUAGGACUGGUAUCAGACUAUCAGUCUGCUGGCAUCGAGU .....((((....((((((.(((..(((.(((.----------...))).)))..))).))))))..(((.....(((((((((......)))))))))..)))....)))) ( -22.80, z-score = -1.00, R) >droSim1.chr2L 1611217 100 + 22036055 AAUUUACUCUCCUUGAGUUCAAGCCAUCCCUUU----------CAAGAGCAGUUCCUUCGACUUACCCCAAAAUAGGACUGGUAUCU--CUAUCAGUCUGCUGGCAUCGAGU .....((((....((((((.(((..((..(((.----------...)))..))..))).))))))..(((.....(((((((((...--.)))))))))..)))....)))) ( -21.10, z-score = -0.75, R) >droSec1.super_14 1583243 100 + 2068291 AAUUUACUUCCCUUGAGUUCCAGCCAUCCCUUU----------CAAGAGCAAUUCCUUCGACUCAUCCCAAAAUAGGACUGGUAUCU--CUAUCAGUCUGCUGGCAUCGAGU ...........(((((...(((((.........----------...((((.........).)))...........(((((((((...--.))))))))))))))..))))). ( -24.70, z-score = -2.45, R) >droYak2.chr2L 1615417 108 + 22324452 UAUUUACCCCCCUUGAGUUCCAGCUCCCCUUUUACCCACCUCUGAAGAGCAGGUCCUUCGCCUUGCCCCAAAACUAGACUGGUAUCU--CUAUCAGUCGACUGGCAUCGA-- ............((((...((((.((......................((((((.....))).)))..........((((((((...--.))))))))))))))..))))-- ( -22.30, z-score = -0.89, R) >droEre2.scaffold_4929 1689508 98 + 26641161 UAUUUACUCCCCUUGAGUUCCAGCUCCCCUU------------GAAGAGCAGUUCCUUCGACUUACCCCAAAACUAGACUGGUAUCU--CUAUCAGUCGACUGGCAUCGAGU ...........(((((...((((.((...((------------((((........))))))...............((((((((...--.))))))))))))))..))))). ( -24.70, z-score = -2.09, R) >consensus AAUUUACUCCCCUUGAGUUCCAGCCAUCCCUUU__________CAAGAGCAGUUCCUUCGACUUACCCCAAAAUAGGACUGGUAUCU__CUAUCAGUCUGCUGGCAUCGAGU ...........(((((...((((.((........................((((.....)))).............((((((((......))))))))))))))..))))). (-17.60 = -17.12 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:50 2011