| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,870,022 – 16,870,114 |
| Length | 92 |
| Max. P | 0.647277 |
| Location | 16,870,022 – 16,870,114 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 90.43 |
| Shannon entropy | 0.18350 |
| G+C content | 0.37926 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -10.48 |
| Energy contribution | -10.20 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16870022 92 + 23011544 UACAGCAAAUAAGAAACAUUAAAUAAACAAUCAAAGAAACG--GAGUAUUGCUCCGCAACUGCCAACAACAUUCAACGACAACCAGUUGCUCUG ..................................(((...(--(((.....))))(((((((.....................)))))))))). ( -14.90, z-score = -2.24, R) >droSim1.chr2L 16553617 92 + 22036055 UACAGCAAAUAAGAAACAUUAAAUAAACAAUCAAAGAAAAG--GAGUAUUGCUCCGCAACUGCCAACAACAUCCAACGACAACCAGUUGCUCUG ..................................(((...(--(((.....))))(((((((.....................)))))))))). ( -14.80, z-score = -2.34, R) >droSec1.super_7 507204 92 + 3727775 UACAGCAAAUAAGAAACAUUAAAUAAACAAUCAAAGAAAAG--GAGUAUUGCUCCGCAACUGCCAACAACAUCCAACGACAACCAGUUGCUCUG ..................................(((...(--(((.....))))(((((((.....................)))))))))). ( -14.80, z-score = -2.34, R) >droYak2.chr2R 16904144 92 - 21139217 UACAGCAAAUAAGAAAAAGCAGAUAAACAAUUAAAUAAUAG--GAGUAUUGCUCCGCAACUGCCAACAACAUCCAACGACAACCAGUUGCUCUG ...................((((.................(--(((.....))))(((((((.....................))))))))))) ( -16.40, z-score = -2.48, R) >droEre2.scaffold_4845 15225479 92 - 22589142 UACAGCAAAUAAGAAACAGCAAAUAAACAAUUAAACAGUAG--GAGUAUUGCUCCGCAACUGCCAACAACAUCCAACGACAACCAGUUGCUCUG ....((............))...............(((..(--(((.....))))(((((((.....................))))))).))) ( -14.90, z-score = -1.48, R) >droAna3.scaffold_12916 7430107 91 + 16180835 UACAGCAAAUAAGAAGUA--AAACAAACAAUUAAAUAAAAAACGAGUAUUGCUUCGCAGCUGACAACAACAG-CAACAACAACCAGUUGCUCUG ..((((......((((((--(.((.....................)).)))))))...))))........((-((((........))))))... ( -17.40, z-score = -2.92, R) >consensus UACAGCAAAUAAGAAACAUUAAAUAAACAAUCAAAGAAAAG__GAGUAUUGCUCCGCAACUGCCAACAACAUCCAACGACAACCAGUUGCUCUG ...........(((.............................(((.....))).(((((((.....................)))))))))). (-10.48 = -10.20 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:36 2011