| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,852,732 – 16,852,837 |
| Length | 105 |
| Max. P | 0.690380 |
| Location | 16,852,732 – 16,852,837 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 73.83 |
| Shannon entropy | 0.36480 |
| G+C content | 0.35967 |
| Mean single sequence MFE | -23.27 |
| Consensus MFE | -12.53 |
| Energy contribution | -13.65 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16852732 105 - 23011544 AAAUUUAAACAUAUACUUAGACAACAAAA--UAUAGCACACCUUUUGGCGG-GUUUUUGAGCCGACAACUGGUUUGAAGCUUCGCUAAAAAGUUUGCAAUUUAUAUUA ...........................((--(((((((.((.(((((((((-(.(((..(((((.....)))))..))).)))))))))).)).)))....)))))). ( -26.00, z-score = -3.33, R) >droSec1.super_7 496941 106 - 3727775 AAAAUUAAACACACAUUUUGACAACAGAA--UAUAGCACACCUUUUGGCGGUUUUUUUGAGUCGUCAGCGGGUUCGCAGCUUCGCUAGAGCGUUUGCAAUUUAUAUUA ...........................((--((((((..((((.((((((..((....))..)))))).))))..)).((..(((....)))...))....)))))). ( -25.00, z-score = -1.79, R) >droEre2.scaffold_4845 15197552 95 + 22589142 UUAGUUAAACACAUAUUUUGACACUAAAAAUCAUAGCACGGCUUUUGGCGG------------GUAAACGGGUUCGUACCUUCGCUAGAGAGUUUGCAAAUUA-AUAA ...((((((.......)))))).............(((.((((((((((((------------((..(((....))))))..))))).)))))))))......-.... ( -18.80, z-score = -0.85, R) >consensus AAAAUUAAACACAUAUUUUGACAACAAAA__UAUAGCACACCUUUUGGCGG__UUUUUGAG_CGUCAACGGGUUCGAAGCUUCGCUAGAGAGUUUGCAAUUUAUAUUA ...................................(((.((.(((((((((.......(((((.......)))))......))))))))).)).)))........... (-12.53 = -13.65 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:35 2011