| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,816,571 – 16,816,624 |
| Length | 53 |
| Max. P | 0.948300 |
| Location | 16,816,571 – 16,816,624 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 70.83 |
| Shannon entropy | 0.51854 |
| G+C content | 0.41516 |
| Mean single sequence MFE | -12.22 |
| Consensus MFE | -7.44 |
| Energy contribution | -7.24 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16816571 53 + 23011544 ----------AAUCGUGAAAAAAUCAU--UUUCCCGCUCAACUCCGGACAUCACUGAUGUCGAGC ----------....(.(((((.....)--)))).)((((.((..(((......)))..)).)))) ( -9.50, z-score = -0.96, R) >droSim1.chr2L 16508894 62 + 22036055 -AUUUGUGUUUCCCGCCAAAAAAAUA--AUUUUACGCUAAGCUCCGGGCAUCACUGAUGUCCAGC -.((((.((.....))))))......--............(((..(((((((...)))))))))) ( -10.60, z-score = -0.43, R) >droSec1.super_7 462322 64 + 3727775 -AUUUGUGUUUCCCGUCAAAAAAAAAUCAUUUUACGCUAAGCUCCGGACAUCACUGAUGUCCAGC -......((((..(((.((((........)))))))..))))...(((((((...)))))))... ( -12.90, z-score = -2.24, R) >droYak2.chr2R 16854861 64 - 21139217 AUUUGGGGUUUCCCGCCAAAUGAAAAC-AUUUUACGCUAAACUUUGGACAUCACUGAUGUUCGAC ((((((((....)).))))))......-...............(((((((((...))))))))). ( -14.50, z-score = -1.77, R) >droEre2.scaffold_4845 19887225 64 + 22589142 GUAAGUGGUUUCCCACCAAAUACAUAU-AUUUUACGCUAAACUUUGGACAUCACUGAUGUUCGAC (((..((((.....))))..)))....-...............(((((((((...))))))))). ( -13.60, z-score = -2.18, R) >consensus _AUUGGGGUUUCCCGCCAAAAAAAAAU_AUUUUACGCUAAACUCCGGACAUCACUGAUGUCCAGC .............................................(((((((...)))))))... ( -7.44 = -7.24 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:34 2011