| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,785,856 – 16,785,949 |
| Length | 93 |
| Max. P | 0.931887 |
| Location | 16,785,856 – 16,785,949 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 65.22 |
| Shannon entropy | 0.75895 |
| G+C content | 0.45514 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -15.36 |
| Energy contribution | -15.05 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.36 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.931887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16785856 93 - 23011544 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUA---AAG-GAAAGGAUAAGAAUUAGGGUUAGUCGUUUCGGUGUGCCUAGGCAUC------- ......(((((((.((.((((....)))).)))))))))(((((---...-((((.(((...(((....))).))).))))((....)))))))...------- ( -26.80, z-score = -0.38, R) >droSim1.chr2L 16480761 93 - 22036055 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUA---AAG-UAAAGGAUAAGAAUUAAGGUUAGUCAUUUCGGUGUGACUAGGCAUC------- (((((((((((((.((.((((....)))).)))))))).)))..---.))-))...............(.((((((((......)))))))).)...------- ( -26.40, z-score = -1.30, R) >droSec1.super_7 432569 91 - 3727775 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUA---AAG-UAAAGGAUAAGAAUAAAGGUUAGUCAGGUUAG--UGACUAGGCAUC------- (((((((((((((.((.((((....)))).)))))))).)))..---.))-))...............(.(((((((......--))))))).)...------- ( -24.40, z-score = -0.75, R) >droEre2.scaffold_4845 19856451 93 - 22589142 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUG---AAG-UGAAGGAUAAGAAUGCAGGUUAGUCGUCUUGCUUUGACGAGGCACU------- ......(((((((.((.((((....)))).)))))))))((((.---..(-(.((((.(((((..((......))..))))))))).)).))))...------- ( -28.70, z-score = -0.46, R) >droYak2.chr2R 16822965 93 + 21139217 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUG---AAU-UGAAAGAUAAGAAUUAAGGUUAGUCGUUUUGUUUGGACGAGGCACU------- ((((..(((((((.((.((((....)))).)))))))))((((.---(((-(..........)))).))))...((((((.....))))))))))..------- ( -23.40, z-score = -0.07, R) >droAna3.scaffold_12916 7345523 92 - 16180835 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUA---AAG-AUCAUAAAAGAA-AUUCAAUAAGUACUAGU-UGGAUAAGAAGCAUCU------ (((((((((((((.((.((((....)))).)))))))).)))..---...-............-(((((((........))-)))))....))))...------ ( -22.30, z-score = -0.98, R) >dp4.chr4_group3 8697672 96 + 11692001 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUG---GAA-AGGAAAGCAAAACAAUCGAUAUGGAUGAGUAUGGUUUAAGAGCGAAUUU---- .(((..(((((((.((.((((....)))).))))))))).(((.---...-))).((((...((.(((......)))..))...))))...)))......---- ( -22.40, z-score = 0.20, R) >droPer1.super_1 5801881 96 + 10282868 UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUG---GAA-AGGAAAGCAAAACAAUCGAUAUGGAUGAGUAUGGUUUAAGAGCGAAGUU---- .(((..(((((((.((.((((....)))).))))))))).(((.---...-))).((((...((.(((......)))..))...))))...)))......---- ( -22.40, z-score = 0.35, R) >droMoj3.scaffold_6500 2814066 94 - 32352404 UGUUGGUAGCGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUAAGUGGA--GCAAACGGAAAUCCCAGUUUAGUAAUUGACUCGCGAGUCGCAGC-------- ....(((((((((.((.((((....)))).)))))))).)))...((((.--((....((....))(((((....)))))....))...))))...-------- ( -24.40, z-score = 1.04, R) >droVir3.scaffold_12963 10133698 97 - 20206255 UGUUGGUAGCGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUAAUGGAA--UUAAAAAGGAAUAAUGUUUUAGUUUAUGGCUGGAAACAUGUCGUGGU----- ....(((((((((.((.((((....)))).)))))))).))).....(((--((((((..........)))))))))(((((((....)).)))))...----- ( -25.00, z-score = -1.11, R) >droGri2.scaffold_15252 13268300 95 - 17193109 UGUUGGUAGCGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUAUAGAAACGAAAAAAUGAAAUCAAAGAUUAAUAUUUG-CUUAGGAAUUGCUGC-------- .....(((((((.....))..((((((((...(((....)))................((....)).............)-)))))))...)))))-------- ( -17.40, z-score = 0.99, R) >anoGam1.chr3R 50168221 101 - 53272125 UGCUGGUAGCGCUUGAUGUUCUUCUGGGCCUCAGCGUUAGCCUGCGUAUG-AAACGAGUGGAUUAUCGGGUUAG-UUUUGUUUC-AGAUGGUGCUGCUGGCACC (((..(((((((((((.((((....)))).)))((((......)))).((-(((((((..((((....))))..-.))))))))-)...))))))))..))).. ( -36.30, z-score = -1.80, R) >droWil1.scaffold_180764 1142964 96 - 3949147 UGUUGGUAGCGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUAUA-AUG-UAA--AUUGGAUAAUGAUGUAAGAAACCGUUUCAAGAUGUAGUUAUUCA---- (((.(((((((((.((.((((....)))).)))))))).))).)))-...-...--..((((((((.((((..(((.....)))...)))).))))))))---- ( -21.60, z-score = -0.41, R) >consensus UGCUGGUAACGCUUGAUGUUCUUCUGGGCCUCGGCGUUAGCCUA___AAG_UAAAAAAUAAAAAAUAAGGUUAGUAUUUGUGUUGUGACGAGGCAUC_______ ....(((((((((.((.((((....)))).)))))))).))).............................................................. (-15.36 = -15.05 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:32 2011