| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,776,439 – 16,776,502 |
| Length | 63 |
| Max. P | 0.500000 |
| Location | 16,776,439 – 16,776,502 |
|---|---|
| Length | 63 |
| Sequences | 12 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 67.98 |
| Shannon entropy | 0.61911 |
| G+C content | 0.43605 |
| Mean single sequence MFE | -15.99 |
| Consensus MFE | -7.04 |
| Energy contribution | -8.05 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 16776439 63 - 23011544 ------UUGUGUAUUAUUGUGU------AAUGGUCAGCU--UGGGCUAUCUGCUCUGA-UAGAUAGUUAUGGCCGUGU ------.((..((....))..)------)(((((((...--..(((((((((......-))))))))).))))))).. ( -17.30, z-score = -1.72, R) >droSim1.chr2L_random 618086 63 - 909653 ------UUGUGUAUUAUUGUGU------AGUGGUCAGCU--UGGGCUAUCUGCUCUGA-UAGAUAGUUAUGGCCGUGU ------(((..((....))..)------)).(((((...--..(((((((((......-))))))))).))))).... ( -15.90, z-score = -0.86, R) >droSec1.super_7 423166 63 - 3727775 ------UUGUGUAUUAUUGUGU------AAUGGUCAGCU--UGGGCUAUCUGCUCUGA-UAGAUAGUUAUGGCCGUGU ------.((..((....))..)------)(((((((...--..(((((((((......-))))))))).))))))).. ( -17.30, z-score = -1.72, R) >droEre2.scaffold_4845 19847074 63 - 22589142 ------UUGUGUAUUAUUGUGU------AAUGGUCAGCG--UGGGCUAUCUGCUCUGA-UAGAUAGUUAUGGCCGUGU ------.((..((....))..)------)(((((((...--..(((((((((......-))))))))).))))))).. ( -17.30, z-score = -1.48, R) >droYak2.chr2R 16813564 63 + 21139217 ------UUGUGUAUUAUUGUGU------AAUGGUCAGCU--UGGGCUAUCUGCUCUGA-UAGAUAGUUGUGGCCGUGU ------.((..((....))..)------)((((((((((--....(((((......))-)))..)))..))))))).. ( -15.20, z-score = -0.89, R) >droAna3.scaffold_12916 7335970 64 - 16180835 ------UUGUGUAUUAUAUGGUG-----GUUGGUCAGCU--UGGGCUAUCUGGU-CAGCGAGAUAGUGGUAGCCACGU ------..............(((-----((((.(.....--...(((((((.(.-...).)))))))).))))))).. ( -17.20, z-score = -0.57, R) >dp4.chr4_group3 8687799 71 + 11692001 ----UCUUAUGUAUCGU-UGGUGCGUGUGGUGGUCAGCU--UGGGCUAUCUGCUGUGACAAGAUAGUUGCGGCCGUGU ----...(((((((...-..))))))).(((((((....--..))))))).((((..((......))..))))..... ( -22.20, z-score = -0.88, R) >droPer1.super_1 5791728 71 + 10282868 ----UCUUAUGUAUCGU-UGGUGCGUGUGGUGGUCAGCU--UGGGCUAUCUGCUGUGACAAGAUAGUUGCGGCCGUGU ----...(((((((...-..))))))).(((((((....--..))))))).((((..((......))..))))..... ( -22.20, z-score = -0.88, R) >droWil1.scaffold_180764 1133537 50 - 3949147 ------UUGUGUAU--UAUCAU------GUUGGUCAGU----UGGCUAUCUGUUUUUG--UUGAAGAUAU-------- ------....((((--(.(((.------......(((.----.......)))......--.))).)))))-------- ( -5.54, z-score = 0.36, R) >droVir3.scaffold_12963 10123993 52 - 20206255 ------UUGUGUA-----UU--------AUUGGUCAGCU--UAGGCUAUCUGUCUCUG--AGAUAGUUGUGGCCC--- ------.......-----..--------...(((((...--..((((((((.......--)))))))).))))).--- ( -12.70, z-score = -1.00, R) >droMoj3.scaffold_6500 2804135 57 - 32352404 ------UUGUGUA-----UUUA------GAUGGUCAGUUGCUUGGCUAUCUGUCUCGA--AGAUAGUUGUGGACCC-- ------.......-----...(------(((((((((....))))))))))(((((((--......))).))))..-- ( -13.30, z-score = -1.07, R) >droGri2.scaffold_15252 13258228 66 - 17193109 UUGUGUAUGUAUAC-AUUUUAU------UGUGGUCAGUU--GUGGCUAUCUGUCAUUG--AGAUAGUUGUGGCCCCA- .(((((....))))-)......------..(((...(((--(..(((((((.......--)))))))..)))).)))- ( -15.80, z-score = -1.01, R) >consensus ______UUGUGUAUUAUUUUGU______AAUGGUCAGCU__UGGGCUAUCUGCUCUGA_UAGAUAGUUGUGGCCGUGU ...............................(((((.......((((((((.........)))))))).))))).... ( -7.04 = -8.05 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:22 2011