| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,744,674 – 16,744,780 |
| Length | 106 |
| Max. P | 0.770107 |
| Location | 16,744,674 – 16,744,780 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.76 |
| Shannon entropy | 0.50887 |
| G+C content | 0.54257 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.75 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16744674 106 - 23011544 GUGUUGCUGAGCAUCUGGCGGACCACUUGGUGGUGCGCUGGAUG---CGCC---------ACCAGCAUGAUUGGUGGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAGCAAAAAGAA-- ...((((((((((((..(((.(((((...))))).)))..))))---)(((---------((((.((....)).)))).)))...((((.....)).))......)))))))......-- ( -48.00, z-score = -4.07, R) >droVir3.scaffold_12963 10086423 108 - 20206255 --AUUG-UGUGGAUCGGGUGCAAGCGCGGGCGCAGCGUUUGACGCCGCCCCGCCGCCUACACCAGCACUAUUGGUGGUUGGUGGAGCACUUAUGGUGGCGUUGCUGCAAAA--------- --....-((..(..((((((...(((((((.((.(((.....))).)))))).)))...))))..((((((.((((.((....)).)))).)))))).))...)..))...--------- ( -43.80, z-score = 0.41, R) >droMoj3.scaffold_6500 2764977 107 - 32352404 --AUUG-UGUGGAUCCGGUGCAAGUGAGGGUGCAGCGUUUGACGCCGCACCGCCACCUAAACCAGCAUUAUUGGUAGUAGGUGGAGCACUUAUGGUGGCAUUACUGCAAG---------- --.(((-(((((..(((.(..(((((..(((((.(((.....))).))))).(((((((.(((((.....)))))..)))))))..)))))..).)))..)))).)))).---------- ( -42.40, z-score = -2.11, R) >dp4.chr4_group3 8652982 103 + 11692001 UUGCUGUUGUGCAUCGGGCGGGCCACUUGGUGGUGCGCUUGAUG---CGCC---------ACCAGCAUGAUUGGUGGUGGGUGGAGCACUUAUGGUAGCAUUACUUUACCAAAAA----- .(((((..((((((((((((.(((((...))))).)))))))))---))).---------..)))))...(((((((..(((((.((((.....)).)).))))))))))))...----- ( -47.40, z-score = -3.55, R) >droPer1.super_1 5756849 103 + 10282868 UUGCUGUUGUGCAUCGGGCGGGCCACUUGGUGGUGCGCUUGAUG---CGCC---------ACCAGCAUGAUUGGUGGUGGGUGGAGCACUUAUGGUAGCAUUACUUUACCAAAAA----- .(((((..((((((((((((.(((((...))))).)))))))))---))).---------..)))))...(((((((..(((((.((((.....)).)).))))))))))))...----- ( -47.40, z-score = -3.55, R) >droWil1.scaffold_180764 1088063 111 - 3949147 UUGCUGCUGGGCAUCGAGCGGGCCAUUCGGUUGUGCAUUUAAUGCACCGCC---------UCCUGCCUGGUUAGUAGUGGGUGGAGCACUUAUUGUGGCAUUACUGUAAGAAUAAAAGAA ...(((((.(....).)))))......((((.((((...((((((.(((((---------..((((.......))))..))))).))).))).....)))).)))).............. ( -33.90, z-score = 0.31, R) >droSim1.chr2L 16443924 106 - 22036055 GUGUUGCUGAGCAUCGGGCGGACCACUUGGUGGUGCGCUGGAUG---CGCC---------ACCAGCAUGAUUGGUAGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAUCAAAAAGAA-- (((((.(...(((((.((((.(((((...))))).)))).))))---)(((---------(((((.....)))))....)))).)))))...((((((.......)))))).......-- ( -40.50, z-score = -2.26, R) >droSec1.super_7 391602 106 - 3727775 GUGUUGCUGAGCAUCGGGCGGACCACUUGGUGGUGCGCCUGAUG---CGCC---------ACCAGCAUGAUUGGUAGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAUCAAAAAGAA-- (((((.(...((((((((((.(((((...))))).)))))))))---)(((---------(((((.....)))))....)))).)))))...((((((.......)))))).......-- ( -44.20, z-score = -3.28, R) >droYak2.chr2R 16781208 106 + 21139217 GUGUUGCUGAGCAUCGGGCGGGCCACUUGGUGGUGCACUGGAUG---CGCC---------ACCAGCAUGAUUGGUGGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAGUAAAAAGGA-- ((((((((..(((((.((.(.(((((...))))).).)).))))---)(((---------((((.((....)).)))).)))...........))))))))..((((.....))))..-- ( -41.20, z-score = -1.99, R) >droEre2.scaffold_4845 19816358 106 - 22589142 GUGUUGCUGAGCAUCGGGCGGACCACUUGGUGGCGCGCUGGAUG---UGCC---------ACCAGCAUGAUUGGUGGUUGGCGGAGCACUUAUGGUAGCAUUACUUUAGCAAAAAGGA-- ...((((((((((((.(((((.((((...))))).)))).))))---)(((---------((((.((....)).))).))))...((((.....)).))......)))))))......-- ( -40.20, z-score = -1.40, R) >droAna3.scaffold_12916 7301812 100 - 16180835 UGGUUGCUGGGCAUCUGGCGGGCCACUUGGUGGUGCGCCAGGUA---CGCC---------ACCAGCAUGGUUGGUGGUGGGCGGAGCACUUAUGGUUGCAUUACUACAUGGG-------- ....((((..((((((((((.(((((...))))).)))))))).---((((---------((((((...)))))))))).))..))))((((((............))))))-------- ( -48.40, z-score = -2.87, R) >consensus GUGUUGCUGAGCAUCGGGCGGACCACUUGGUGGUGCGCUUGAUG___CGCC_________ACCAGCAUGAUUGGUGGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAACAAAAA_____ ..((((((....(((.((((.((.........)).)))).)))....((((.........(((((.....)))))....))))..........))))))..................... (-15.52 = -15.75 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:15 2011