| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,622,535 – 1,622,626 |
| Length | 91 |
| Max. P | 0.981614 |
| Location | 1,622,535 – 1,622,626 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.22 |
| Shannon entropy | 0.52584 |
| G+C content | 0.33389 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -10.92 |
| Energy contribution | -10.92 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1622535 91 - 23011544 -----UGGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAG----CAGCCAAAGGAGCAAGGAAACAAUGCGGAUAU--------------- -----(((.((((((((((((........)))))))))))).........(((.....)))...----...))).....(((.(....)..)))......--------------- ( -20.10, z-score = -2.12, R) >droSim1.chr2L 1593005 91 - 22036055 -----UUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAG----CAACCAAAGGAGCGAGGAAACAAUGCGGAUAU--------------- -----....((((((((((((........)))))))))))).......((((....((.....)----).)))).....(((.(....)..)))......--------------- ( -19.00, z-score = -1.94, R) >droSec1.super_14 1565403 91 - 2068291 -----UUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAG----CAACCAAAAGAGCGAGGAAACAAUGCGGAUAU--------------- -----....((((((((((((........)))))))))))).......((((....((.....)----).)))).....(((.(....)..)))......--------------- ( -19.00, z-score = -2.07, R) >droYak2.chr2L 1596423 95 - 22324452 -----UUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCCAACAAAAAAAAAAGCUAGCAAACAUUGCGGAUAU--------------- -----....((((((((((((........))))))))))))....((((((((.....))).(((..............)))......))))).......--------------- ( -16.34, z-score = -0.78, R) >droEre2.scaffold_4929 1669389 91 - 26641161 -----UUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACAAG----CAGCCAAAAGAGCAAGGAAACCAUGCGAAUAU--------------- -----....((((((((((((........)))))))))))).......((((..(........)----..)))).....(((.(....)..)))......--------------- ( -18.80, z-score = -2.11, R) >droAna3.scaffold_12916 15024146 93 - 16180835 -----UUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCGCACCAACAAG----ACACCCACAAAG-AAAAAAGUUACGAGUAUACUUG------------ -----(((.((((((((((((........)))))))))))).......(((.....))).))).----............-..........((((....))))------------ ( -14.60, z-score = -1.47, R) >dp4.chr4_group2 651770 96 + 1235136 -----UUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAUC----CGACCAAACAAA-AAAGGACUGGAAAUAAUAUUCGUGG--------- -----(((.((((((((((((........)))))))))))).......(((((...........----.)))))..))).-.........................--------- ( -16.10, z-score = -0.72, R) >droPer1.super_8 3306106 96 - 3966273 -----UUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAUC----CGACCAAACAAA-AAAGGACUGGAAAUAAUAUUCGUGG--------- -----(((.((((((((((((........)))))))))))).......(((((...........----.)))))..))).-.........................--------- ( -16.10, z-score = -0.72, R) >droWil1.scaffold_180708 3441299 106 - 12563649 -----UUGAGAUUGCAAUUCCAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACAACGAC---AUAUCGAAAGACAUAAAAAAAC-AUGCCGAAAUGCGUGUAUAUAUUUC -----....((((((((((............))))))))))..(((.((((((........)))---...((....))))).)))..((-((((......))))))......... ( -19.80, z-score = -1.80, R) >droVir3.scaffold_12963 7694184 74 - 20206255 -----UUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACACC----CAAC--AACAAA-UUUGG----------------------------- -----....((((((((((((........)))))))))))).........(((.....)))..(----(((.--......-.))))----------------------------- ( -14.60, z-score = -3.14, R) >droMoj3.scaffold_6500 29184812 74 + 32352404 -----UUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAUC----CAGC--AACAAA-UUUGC----------------------------- -----....((((((((((((........)))))))))))).........(((.....)))...----..((--((....-.))))----------------------------- ( -14.60, z-score = -1.85, R) >droGri2.scaffold_15252 10779957 81 - 17193109 AGAGAUUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACAACACG----CAGC-UAACAAA-UUUGGG---------------------------- .(((.(((.((((((((((((........)))))))))))).......((((..(........)----..))-)).))).-)))...---------------------------- ( -12.60, z-score = -1.27, R) >consensus _____UUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAG____CAACCAAACAAA_AAGGAAAC_AUGCGGAUAU_______________ .........((((((((((((........)))))))))))).......................................................................... (-10.92 = -10.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:49 2011