| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,693,202 – 16,693,296 |
| Length | 94 |
| Max. P | 0.541288 |
| Location | 16,693,202 – 16,693,296 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 70.78 |
| Shannon entropy | 0.56632 |
| G+C content | 0.45106 |
| Mean single sequence MFE | -14.18 |
| Consensus MFE | -5.41 |
| Energy contribution | -5.23 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16693202 94 - 23011544 ------CUGACC-UUUUGCCA-AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCU--ACUGUCCCCCCAAUUUUCCCCUUGCC-----CCGCGUUUCCAUUU- ------..(((.-...(((((-((((((...(((((....)))))..)).)))))))))...--...)))....................-----..............- ( -16.20, z-score = -2.23, R) >droSim1.chr2L 16389381 94 - 22036055 ------CUGACC-UUUUGCCA-AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCU--ACUGUCCCCCCAAUUUUCCCCUUUCC-----CCGCAUUUCCAUUU- ------..(((.-...(((((-((((((...(((((....)))))..)).)))))))))...--...)))....................-----..............- ( -16.20, z-score = -2.85, R) >droSec1.super_7 340181 94 - 3727775 ------CUGACC-UUUUGCCA-AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCU--ACUGUCCCCCCAAUUUUCCCCUUUCC-----CCGCGUUUCCAUUU- ------..(((.-...(((((-((((((...(((((....)))))..)).)))))))))...--...)))....................-----..............- ( -16.20, z-score = -2.71, R) >droYak2.chr2R 16729274 99 + 21139217 ------CUGAUC-UUUUGCCA-AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCU--CCUGUCCCACCUACUUGUCCAUUUCCCAUUUCCCUUUUUCCAUUU- ------......-...(((((-((((((...(((((....)))))..)).)))))))))...--.............................................- ( -15.20, z-score = -2.21, R) >droEre2.scaffold_4845 19762907 81 - 22589142 ------CUGACC-UUUUGCCA-AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCUCAACUAGCCCUUCACCCCUUUCCAUUU--------------------- ------......-...(((((-((((((...(((((....)))))..)).)))))))))..............................--------------------- ( -15.20, z-score = -2.38, R) >dp4.chr4_group3 8436652 87 - 11692001 UACGCGCUGACC-UUUUGCCA-AGUUGUUAAUAUUUAUGAAAAUGCCACGAACUUUGCACCU--ACUACUCCUCC--------------C-----UCUCGGUGCCACAUU ...(((((((..-...(((.(-((((((...(((((....)))))..)).))))).)))...--...........--------------.-----..)))))))...... ( -12.65, z-score = -0.94, R) >droPer1.super_1 9887841 101 - 10282868 UACGCGCUGACC-UUUUGCCA-AGUUGUUAAUAUUUAUGAAAAUGCCACGAACUUUGCACCU--ACUACUCCUCCCCCACUUAUAUUCUC-----UCUCUGUGCCACAUU ...((((.((..-...(((.(-((((((...(((((....)))))..)).))))).)))...--..............(....)......-----..)).))))...... ( -7.20, z-score = 0.34, R) >droWil1.scaffold_181132 154605 91 + 1035393 ------CUGACCUUUUUGCCAGAGCUGUUAAUAUUUAUGAAAAUGCCACGAACUUUGCACCUC-CAUCUAGAGCAAGCCUGAACGAGGUC-----CUCCGCUA------- ------..((((((.....(((.((((((....(..(((....(((..........)))....-)))..).))).))))))...))))))-----........------- ( -14.60, z-score = 0.32, R) >consensus ______CUGACC_UUUUGCCA_AGCUGUUAAUAUUUAUGAAAAUGCCACGAGCUUGGCACCU__ACUGUCCCCCCAACUUUCCCCUUUCC_____CCGCGUUUCCAUUU_ ................(((...((((((...(((((....)))))..)).))))..)))................................................... ( -5.41 = -5.23 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:46:02 2011