| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,687,625 – 16,687,770 |
| Length | 145 |
| Max. P | 0.779128 |
| Location | 16,687,625 – 16,687,770 |
|---|---|
| Length | 145 |
| Sequences | 5 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 81.81 |
| Shannon entropy | 0.31857 |
| G+C content | 0.47570 |
| Mean single sequence MFE | -46.00 |
| Consensus MFE | -30.48 |
| Energy contribution | -31.92 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16687625 145 - 23011544 GGAGUAUGGGGUUCAAGUUGGGCACAAGAGU-AAGU-CAGACCAUGGUCAAGCCAGCUGGCUUUAGCUUUAUUGGCUGAUGCCAGAAAACCCUGUAAUGACGUUGGUUAAUGGCUACUCCAAGCCAUUAGCUGCGAUUUCUAACAGG (((((((((((((.......(((....((..-...)-).(((....)))..)))..(((((.((((((.....)))))).)))))..)))))))))....(((.(((((((((((......))))))))))))))..))))...... ( -52.50, z-score = -2.53, R) >droSec1.super_7 334743 145 - 3727775 GGAGUAUGGAGUUCAAGUUGGGCACAAGAGU-AAGU-CAGACCAUGGUCAAGCCAGCUGGCUUUAGCUUUAUUGGCUGAUGCCAGAAAACCCUGUAAUGACGUUGGUUAAUGGCUACUCCAAGCCAUUAGCUGCGAUUUCUAACAGG .((.(((((.((((.....))))....((..-...)-)...))))).)).......(((((.((((((.....)))))).))))).....(((((...((.((((((((((((((......))))))))))..)))).))..))))) ( -48.80, z-score = -1.89, R) >droYak2.chr2R 16723845 139 + 21139217 GGAGUAUGGAGUUCAAGUUGGGCACAAGAGU-AAGU-CAGACCAUGGUCAAGCCAGCUG------GCUUUAUUGGCUGAUGCCAGAAAACCCUGUAAUGACGUUGGUUAAUGGCUACUCCAUGCCAUUAGCUGCGAUUUCUAACAGG ...((.(((((.((.(((((((((...((((-(.((-(((((((..((((((((....)------)))...(((((....)))))............))))..)))))..)))))))))..))))..)))))..)).)))))))... ( -45.10, z-score = -1.32, R) >droEre2.scaffold_4845 19757417 139 - 22589142 GGAGUAUGGAGUUCAAGUUGAGCACAAGAGU-AAGU-CAGACCAUGGUCAAGCCAGCUG------GCUUUAUUGGCUGAUGCCAGAAAACCCUGUAAUGACGUUGGUUAAUGGCUACUCCAAGCCAUUAGCUGCGAUUUCUAACAGG .((.(((((.((((.....))))....((..-...)-)...))))).))(((((....)------))))..(((((....))))).....(((((...((.((((((((((((((......))))))))))..)))).))..))))) ( -45.80, z-score = -2.03, R) >droAna3.scaffold_12916 305415 114 + 16180835 --------------------------GGAGUCAAGUCCAGGCCAUGGCC-AGCCAGUUG------GCUUUAAUGGCUAAUGCCCCAGAAGCCAGUAAUGAUGUUGGUUAAAAGUUCACCCCAGACAUUAGCUGGCAUUUCUGUAAGG --------------------------(((......))).(((....)))-.((((((((------(((((...(((....)))...)))))))....((((((((((.........)))...)))))))))))))............ ( -37.80, z-score = -1.68, R) >consensus GGAGUAUGGAGUUCAAGUUGGGCACAAGAGU_AAGU_CAGACCAUGGUCAAGCCAGCUG______GCUUUAUUGGCUGAUGCCAGAAAACCCUGUAAUGACGUUGGUUAAUGGCUACUCCAAGCCAUUAGCUGCGAUUUCUAACAGG ..........((((.....))))...(((((......(((....((((...)))).)))......))))).(((((....))))).....(((((...((.((((((((((((((......)))))))))))..))).))..))))) (-30.48 = -31.92 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:59 2011