| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,613,664 – 1,613,759 |
| Length | 95 |
| Max. P | 0.727077 |
| Location | 1,613,664 – 1,613,759 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 61.31 |
| Shannon entropy | 0.75792 |
| G+C content | 0.43871 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -8.46 |
| Energy contribution | -9.63 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1613664 95 + 23011544 GCCAAACUUCGCAUGAUGAUAUUCCUGGUCCCAGAGGUAGUAAAUCCCACGUUUGGCAGAAAUCGAU-UGAGUAUAUCCCACAGAUCCGAUGUAAA (((((((.......(((..(((..(((....)))..)))....)))....)))))))....((((((-(..((.......)).))).))))..... ( -19.10, z-score = -0.35, R) >droSim1.chr2L 1588048 95 + 22036055 GCCAAACUUCGCAUGAUGGUAUCCCUGGUCCCAGAGGUAGUACAUUCCAAGUUUGGCAGGAACCGAA-GGACUAUAUCCACCAGGUCCGAUGUAAA (((((((((.(.(((.((.((((.(((....))).)))).))))).).))))))))).(((.((...-(((.....)))....)))))........ ( -31.60, z-score = -2.47, R) >droSec1.super_14 1556767 96 + 2068291 GCCAAACUUCGCAUGAUAGUAUCCCUGGUCCCAGAGGUAGUACAUCCCAAGUUUGGCAGGAAUCGAAAGGACUAUAUCCACCAGGUCCGAUGUAAA (((((((((.(.(((.((.((((.(((....))).)))).))))).).)))))))))...........(((((..........)))))........ ( -29.90, z-score = -2.74, R) >droYak2.chr2L 1587086 85 + 22324452 GGCAAACUUCACAUGAUGCUAUCCUUAAUCCCGGAGAUAGUGCGUCUCAAGUUUGG----------A-UGACUAUAUCCUAUUAAUCCGAUGUAAA ..(((((((.....(((((..(((........)))......)))))..))))))).----------.-....((((((..........)))))).. ( -15.80, z-score = -0.22, R) >droEre2.scaffold_4929 1659982 95 + 26641161 GUCAAACUUCACAUGAUGGUAACCUUGAUCGCGGAGAUAGUGCAUCCCAAGUUUGGUCGCAAUCGGA-GGAGUUUAUCCCAUUGAUCCGAUGUAAA (((((((((.....(((.(......).)))..((.(((.....))))))))))))).)(((.(((((-(((.....)))......))))))))... ( -19.80, z-score = 0.89, R) >droAna3.scaffold_12916 15013687 77 + 16180835 ------------GCCAAUGUUUUUGUAUAUUUAUAGACCAUAGUCCUUAACAUCAUUU--AAGGAAGAGAGCUCUAUGUGGUGGUUCCAAG----- ------------((((.....((((((....))))))(((((.(((((((......))--)))))(((....))).)))))))))......----- ( -16.40, z-score = -1.28, R) >consensus GCCAAACUUCGCAUGAUGGUAUCCCUGGUCCCAGAGAUAGUACAUCCCAAGUUUGGCAG_AAUCGAA_GGACUAUAUCCAACAGAUCCGAUGUAAA (((((((((.(.(((.((.((((.(((....))).)))).))))).).)))))))))....................................... ( -8.46 = -9.63 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:48 2011