| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,653,301 – 16,653,392 |
| Length | 91 |
| Max. P | 0.577611 |
| Location | 16,653,301 – 16,653,392 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.80 |
| Shannon entropy | 0.31598 |
| G+C content | 0.42514 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.68 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16653301 91 - 23011544 UUUCAGUUUUCCUGGAACCACUUCACCCGGAUCCAAUCCGGUUUGUUUGCCGC---AUACGGCGACA-------------------------UUUGUUCAAUAAAUUAUUUUUACAGAC ...........(((((((........((((((...))))))..((((.((((.---...))))))))-------------------------...))))..((((.....))))))).. ( -20.40, z-score = -2.06, R) >droAna3.scaffold_12916 271797 119 + 16180835 UUCAGUUUUUCCGGGAAUCGUUUUACCCGGAUCUGAUCCGGUUUGUUUGUUCCACGAUACGACGACAACGACUAUAAGUCUCUCUGUUGGAGUCUGUAUAAUAAAUUAUUUUUACAGCC .((((....((((((((.....)).)))))).))))...((((.((..........(((((((..(((((((.....))).....))))..))).))))..............)))))) ( -27.55, z-score = -0.74, R) >droEre2.scaffold_4845 19723846 91 - 22589142 UUCUGAUUUACCAGGAACCACUUCACCCGGAUCCAAUCCGGUUUGUUUGCCGC---AUACGGCGACA-------------------------UUUGGUCAAUAAAUUAUUUCCACAGAC (((((......)))))((((......((((((...))))))..((((.((((.---...))))))))-------------------------..))))..................... ( -21.80, z-score = -1.76, R) >droYak2.chr2R 16688880 90 + 21139217 -UACAGUUUUCCAGGAACCACUUCAACCGGAUCCAAUCCGGUUUGUUUGCCGC---AUACGGCGACA-------------------------UUUGGUCAAUAAAUUAUUUUUACAGAC -....(((..(((((.........((((((((...))))))))((((.((((.---...))))))))-------------------------)))))..)))................. ( -21.60, z-score = -2.23, R) >droSec1.super_7 300339 91 - 3727775 UUUCAGUUUUCCAGGAACCACUUCACCCGGAUCCAAUCCGGUUUGUUUGCCGC---AUACGGCGACA-------------------------UUUGGUCAAUAAAUUAUUUUUACAGAC .....(((..(((((...........((((((...))))))..((((.((((.---...))))))))-------------------------)))))..)))................. ( -19.50, z-score = -1.33, R) >droSim1.chr2L 16351836 91 - 22036055 UUUCAGUUUUCCAGGAACCACUUCACCCGGAUCCAAUCCGGUUUGUUUGCCGC---AUACGGCGACA-------------------------UUUGGUCAAUAAAUUAUUUUUACAGAC .....(((..(((((...........((((((...))))))..((((.((((.---...))))))))-------------------------)))))..)))................. ( -19.50, z-score = -1.33, R) >consensus UUUCAGUUUUCCAGGAACCACUUCACCCGGAUCCAAUCCGGUUUGUUUGCCGC___AUACGGCGACA_________________________UUUGGUCAAUAAAUUAUUUUUACAGAC ....(((((.(((((...........((((((...))))))..((((.((((.......)))))))).........................))))).....)))))............ (-14.85 = -14.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:57 2011