| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,648,394 – 16,648,496 |
| Length | 102 |
| Max. P | 0.967574 |
| Location | 16,648,394 – 16,648,496 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 94.65 |
| Shannon entropy | 0.08360 |
| G+C content | 0.38467 |
| Mean single sequence MFE | -15.11 |
| Consensus MFE | -12.65 |
| Energy contribution | -13.39 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16648394 102 - 23011544 ------UCUCUUUAAUUCACAGUUUCCCUACGUAACCCUCUUUCCCCUUAAUUCGCAU-CCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAAC ------...............(((((............................((((-.((((........)))).))))((((((((....))))))))...))))) ( -15.60, z-score = -3.04, R) >droEre2.scaffold_4845 19719039 108 - 22589142 UCCCAUUUUCUUUAAUUCACAGUUUCCCUACAUAACCCUGUUUCCCCUUAAUUCGCAG-CCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAAC .....................(((((....(((((...((((......(((((((((.-.((((........))))..)))).)))))....)))).)))))..))))) ( -14.20, z-score = -2.01, R) >droSec1.super_7 295450 103 - 3727775 ------UCUCUUUAAUUCACAGUUUCCCUACGUAACCCUCUUUCCCCUUAAUUCGCAUCCCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAAC ------...............(((((...........................((((((.............))))))..(((((((((....)))))))))..))))) ( -15.32, z-score = -3.10, R) >droSim1.chr2L 16346953 103 - 22036055 ------UCUCUUUAAUUCACAGUUUCCCUACGUAACCCUCUUUCCCCUUAAUUCGCAUCCCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAAC ------...............(((((...........................((((((.............))))))..(((((((((....)))))))))..))))) ( -15.32, z-score = -3.10, R) >consensus ______UCUCUUUAAUUCACAGUUUCCCUACGUAACCCUCUUUCCCCUUAAUUCGCAU_CCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAAC .....................(((((...........................((((((.............))))))..(((((((((....)))))))))..))))) (-12.65 = -13.39 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:55 2011