| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,635,985 – 16,636,097 |
| Length | 112 |
| Max. P | 0.846653 |
| Location | 16,635,985 – 16,636,097 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 56.25 |
| Shannon entropy | 0.82124 |
| G+C content | 0.35121 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -5.47 |
| Energy contribution | -9.05 |
| Covariance contribution | 3.58 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16635985 112 + 23011544 ACAUGUUUGAAUCAUGAGGCUAUAAAUUUCGAUGCCAAUCUUUAGUUUUGUGCAUACUU----UUUUUGAUUAAUAUUUCCCGCAUCGCUGAUUCGUGUCAGCGAACCCUAAAAAU .((((.......))))(((...((((.....(((((((.........))).))))....----..))))................((((((((....))))))))..)))...... ( -21.10, z-score = -1.04, R) >droSim1.chr2L 16334545 108 + 22036055 --AUGUUUGAAUCACAAGGCUAUAAAUUUCGAUGCCAAUCUUUAGUUUUGUGUAUACUU----UUUGU--UUAAUAUUUCCUGCAUCGCUGAUUCGUGUCAGCGAACCCUGAAAAU --.(((..(((.((((((((((....................))))))))))((.((..----...))--.))....)))..)))((((((((....))))))))........... ( -22.55, z-score = -1.95, R) >droSec1.super_7 283092 108 + 3727775 --AUGUUUGAAUCACAAAGCUAUAAAUUUCGAUGCCAAUCUUUAGUUUUGUGUAUACUU----UUUGU--UUAAUAUUUCCUGCAUCGCUGAUUCGUGUCAGCGAACCCUGAAAAU --.(((..(((.((((((((((....................))))))))))((.((..----...))--.))....)))..)))((((((((....))))))))........... ( -22.95, z-score = -2.60, R) >droEre2.scaffold_4845 19706606 116 + 22589142 GCAUGUUUUAAUCACAAGGCAUUCAAUUUCGAUGUUAAUCUUUAGUUUUGUGUAUUUUUGCAUUUAUUUUUUAAUAUUUCCUGCAUCGCUGAUUCGUGUCAGCGAACCCUGAAAAU (.(((((((......))))))).)..((((((((((((.....(((...(((((....)))))..)))..)))))))).......((((((((....)))))))).....)))).. ( -23.40, z-score = -1.87, R) >droPer1.super_1 9824822 92 + 10282868 ---------------AAGUUUUUGAUUUUUGAUA--GAUAUUGAGAUAU-UGUUCGACUA---CUUUUCUCUAGGUUUCCCUAGAGA---AACUCCCCUCUCCAAAAGGGGAGCAG ---------------((((..((((.(((..((.--...))..)))...-...))))..)---)))(((((((((....))))))))---).(((((((.......)))))))... ( -28.60, z-score = -2.85, R) >droWil1.scaffold_181132 88938 86 - 1035393 ----------------------GAGUGUUGGAUA---AGCCUUUCAUACUCGCUUUGUCAUUACUCUUACAACACUUUUCUUAGUGU-----AUGCCUAAUUCGAUGCCUGAAUGU ----------------------(((((...((((---(((...........)).)))))..))))).....(((((......)))))-----.......(((((.....))))).. ( -15.10, z-score = -0.66, R) >consensus __AUGUUUGAAUCACAAGGCUAUAAAUUUCGAUGCCAAUCUUUAGUUUUGUGUAUACUU____UUUUU__UUAAUAUUUCCUGCAUCGCUGAUUCGUGUCAGCGAACCCUGAAAAU ............((((((((((....................)))))))))).................................((((((((....))))))))........... ( -5.47 = -9.05 + 3.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:49 2011