| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,628,950 – 16,629,062 |
| Length | 112 |
| Max. P | 0.778389 |
| Location | 16,628,950 – 16,629,062 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.17 |
| Shannon entropy | 0.37943 |
| G+C content | 0.50833 |
| Mean single sequence MFE | -34.47 |
| Consensus MFE | -24.10 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16628950 112 + 23011544 CUUGUGGUUGUCGCACAUUUCCGGCUUAAAGUGGCAAUGUUGA-UGUUGCUGGUGUUGCCGCUUUGGAUGGUAAAGCUGAUGGUAUAGCUGGUGUUUGCUGGUGUUGCUGUUG ..((((.......))))((((((..((((((((((((((..(.-......)..)))))))))))))).))).)))...(((((((..((..((....))..))..))))))). ( -32.00, z-score = -0.77, R) >dp4.chr4_group3 8367438 91 + 11692001 UUUGUGGUUGUCGCACAUUUCCGGCUUAAAGUGGCAGCGGCGAACGGCAACAACGUUGCCACUCUGGUGGCUCUUGUU---GUUGCUGGCGGUG------------------- (((((.((((((((................)))))))).)))))(((((((((((..(((((....)))))...))))---)))))))......------------------- ( -40.79, z-score = -3.31, R) >droSec1.super_7 276094 108 + 3727775 CUUGUGGUUGUCGCACAUUUCCGGCUUAAAGUGGCAAUGUUGA-UGUUGCUGGUGUUGCCGCUUUGGAUGGUAAAGCU---GGUAUAGCUGGUGUU-GCUGGUGUUGCUGUUG .........((.((((....(((((((((((((((((((..(.-......)..)))))))))))))........))))---))..((((.......-)))))))).))..... ( -31.80, z-score = -0.85, R) >droSim1.chr2L 16324554 108 + 22036055 CUUGUGGUUGUCGCACAUUUCCGGCUUAAAGUGGCAAUGUUGA-UGUUGCUGGUGUUGCCGCUUUGGAUGGUAAAGCU---GGUAUAGCUGGUGUU-GCUGGUGCUGCUGUUG .........((.((((....(((((((((((((((((((..(.-......)..)))))))))))))........))))---))..((((.......-)))))))).))..... ( -33.30, z-score = -0.91, R) >consensus CUUGUGGUUGUCGCACAUUUCCGGCUUAAAGUGGCAAUGUUGA_UGUUGCUGGUGUUGCCGCUUUGGAUGGUAAAGCU___GGUAUAGCUGGUGUU_GCUGGUGUUGCUGUUG ..((((.......))))...(((((((((((((((((((..(........)..))))))))))))))........((.....))...)))))..................... (-24.10 = -23.73 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:47 2011