| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,619,160 – 16,619,264 |
| Length | 104 |
| Max. P | 0.557181 |
| Location | 16,619,160 – 16,619,264 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.30771 |
| G+C content | 0.30932 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -14.00 |
| Energy contribution | -15.36 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16619160 104 + 23011544 ------AAUUUUCUCCGGAAUAAGCGUAGCGAUGUUAAUCUUCACAUGCGAAGAAUAAUUUCAUGUUAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUGACAU ------..........(((((.(((((....)))))..(((((......)))))...)))))(((((((((((.(((((((..........))))))).))))))))))) ( -21.30, z-score = -2.03, R) >droEre2.scaffold_4845 19690009 110 + 22589142 GAGAAAGAGUUUCUCCGAAAAAAGCGUAGCGUUCUUAUUUUACACACGCGUGGAAUAAUUUUAGUUCAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUGACAU .....((((((..((((......((((.(.((.........)).))))).))))..)))))).((.(((((((.(((((((..........))))))).))))))))).. ( -20.70, z-score = -1.39, R) >droYak2.chr2R 16654791 110 - 21139217 GAAAACUAGUUUCUCUGAAAAAAGCAUUGCGCUGUUUAUCUUCACAAGCGGAGAAUAAUUUUAUUCCAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUAACAU ..........(((((((.....(((.....)))((........))...)))))))............((((((.(((((((..........))))))).))))))..... ( -14.30, z-score = -0.05, R) >droSec1.super_7 266548 103 + 3727775 ------AAUUUUCUUCGGAA-AAGCGUAGCGAUGUUAAUUCUAACAUGCGAAGAAUAAUUUCAUGUUAGAUGUGAAUUUAACCACCACCAAUUGAAUUAAAAUUUGACAU ------..(((((....)))-)).....((.((((((....))))))))...(((....)))(((((((((...(((((((..........)))))))...))))))))) ( -20.70, z-score = -2.05, R) >droSim1.chr2L 16315058 103 + 22036055 ------AAUUUUCUUCGGAA-AAGCGUUGCGAUGUUAAUCUUUACAUGCGAAGAAUAAUUUCAUGUUAGAUGUGAAUUUAACCAUCGCCAAUUGAAUUAACAUUUGACAU ------..(((((....)))-))...((((.((((........)))))))).(((....)))(((((((((((.(((((((..........))))))).))))))))))) ( -23.90, z-score = -2.29, R) >consensus ______AAUUUUCUCCGGAA_AAGCGUAGCGAUGUUAAUCUUCACAUGCGAAGAAUAAUUUCAUGUUAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUGACAU ..........(((((((......((...)).((((........)))).))))))).......(((((((((((.(((((((..........))))))).))))))))))) (-14.00 = -15.36 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:42 2011