| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,605,741 – 16,605,844 |
| Length | 103 |
| Max. P | 0.580405 |
| Location | 16,605,741 – 16,605,844 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 65.52 |
| Shannon entropy | 0.61475 |
| G+C content | 0.31459 |
| Mean single sequence MFE | -16.68 |
| Consensus MFE | -6.81 |
| Energy contribution | -7.03 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16605741 103 + 23011544 AUCAAUAAUAUGCACAAUUUUGUAUUUAACGGAUAUUUGUUUUUCGGCUGGCUUUCAUUUAAUUGCCAGUAUUUCCUUGGAAAGUGUUACGAUCAACAAAAAU------ (((......(((((......)))))......))).((((((..(((((((((............)))))).((((....))))......)))..))))))...------ ( -22.90, z-score = -2.39, R) >droSim1.chr2L 16301317 92 + 22036055 CUUAAUUAUAAGCACAAUUUUGUAUUUAACGGAUAUUUGUUUUUCGGCUGGCUUUCAUUUAAUUGCCAGUAUUUCCUU-----------CGAUCAACAUAAAU------ .((((.((((((......)))))).))))........((((..(((((((((............))))))........-----------)))..)))).....------ ( -14.10, z-score = -1.11, R) >droSec1.super_7 253259 92 + 3727775 CUUAAUUAUAAGCACAUUUUUGUAUUUAACGGAUAUUUGUUUUUCGGCUGGCUUUCAUUUAAUUGCCAGUAUUUCCUU-----------CGAUCAACAUAAAU------ .((((.((((((......)))))).))))........((((..(((((((((............))))))........-----------)))..)))).....------ ( -14.10, z-score = -1.20, R) >droYak2.chr2R 16641234 102 - 21139217 AUAAAUAAGAUGCAAAAUUU-GUGAAUAACAGAAAUUUUAUUUUCGGCUGGCUUUCAUUUAUUUGCCAGUACUUCCUUUGAAAAAGCUACGAUCAAUAUAAAU------ ........((((((((((((-.((.....)).))))))).((((((((((((............))))))........)))))).))....))).........------ ( -16.20, z-score = -0.54, R) >droEre2.scaffold_4845 19676403 93 + 22589142 CUAAAUAAUAUGCAAGAUGUUGUUUAUAACGGAUAUUCGAUUUUUGGCUGGCUUUCAUUUAUUUGCCAGUAUUUCCAGU----------AUUCCAAUAUAAAU------ .((((((((((.....))))))))))....(((((((.((......((((((............))))))...)).)))----------))))..........------ ( -20.00, z-score = -2.10, R) >droGri2.scaffold_14978 764711 92 + 1124632 UCCAAAAAGGUAUAUACCCC-GUAC---ACAGCCAAUCGUGGGUCAGC--ACACUCACUAAUCAAUCAGUCAAUCAGU-----------CAAUCGGGACAAACUGUUUU ........(((....)))..-....---((((......((((((....--..))))))..................((-----------(......)))...))))... ( -12.80, z-score = -0.10, R) >consensus CUAAAUAAUAUGCACAAUUUUGUAUUUAACGGAUAUUUGUUUUUCGGCUGGCUUUCAUUUAAUUGCCAGUAUUUCCUU___________CGAUCAACAUAAAU______ ..............................................((((((............))))))....................................... ( -6.81 = -7.03 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:40 2011