Locus 2144

Sequence ID dm3.chr2L
Location 16,590,081 – 16,590,180
Length 99
Max. P 0.658696
window2952

overview

Window 2

Location 16,590,081 – 16,590,180
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 79.14
Shannon entropy 0.35463
G+C content 0.38261
Mean single sequence MFE -22.10
Consensus MFE -11.02
Energy contribution -11.26
Covariance contribution 0.24
Combinations/Pair 1.17
Mean z-score -2.17
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.36
SVM RNA-class probability 0.658696
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16590081 99 + 23011544
ACACGCUUCCCGUGAAAGAUACAUUAGAUUAUAUACACGUCUGUAUAUACAUAUAUACAUUUAUAUCCAUCUACAAGCCGUGUGUGUUUCGCCUGAAGU
....(((((..((((((.(((((((((((((((((((....)))))))).(((((......)))))..)))))......)))))).))))))..))))) ( -25.20, z-score =  -3.30, R)
>droSim1.chr2L 16285321 89 + 22036055
ACACGCUUCCCGUGAAAGAUACAUUAGAUUAUAUACACGUCUGUACAUAUGUAUAU----------CCAUCUACUAGCCGUGUGUGUUUCGCAUGAAGU
....(((((..((((((.(((((((((((.(((((((..(......)..)))))))----------..)))))......)))))).))))))..))))) ( -24.10, z-score =  -2.60, R)
>droSec1.super_7 237644 89 + 3727775
ACACGCUUCCCGUGAAAGAUACAUUAGAUUAUAUACACGUCUGUACAUAUGUAUAU----------CCAUCUACUAGCCGUGUGUGUUUCGCAUGAAGU
....(((((..((((((.(((((((((((.(((((((..(......)..)))))))----------..)))))......)))))).))))))..))))) ( -24.10, z-score =  -2.60, R)
>droYak2.chr2R 16625542 87 - 21139217
ACUCGCUUCCAGU-AAAAAUACAUUACAUUACAU-UGCAUAUACACGUUUGUAUAU----------CCAGCUACUGGAUGUGUGUGUUUCGCAUGAAGU
....(((((..((-..((((((((.(((((....-.(((((((((....)))))))----------...)).....))))))))))))).))..))))) ( -20.30, z-score =  -1.32, R)
>droEre2.scaffold_4845 19658253 81 + 22589142
ACACGCUUACCGUGAAAGAUACAUUACAUUAUAUACACGUCUGUAAAU------------------CCAUCAGCUGGCUGUUUGUCUUUCGCAUGAAGU
....((((...((((((((((............((((....))))...------------------....(((....)))..))))))))))...)))) ( -16.80, z-score =  -1.00, R)
>consensus
ACACGCUUCCCGUGAAAGAUACAUUAGAUUAUAUACACGUCUGUACAUAUGUAUAU__________CCAUCUACUAGCCGUGUGUGUUUCGCAUGAAGU
....(((((..((((((.((((.......(((.((((....)))).))).......................((.....)))))).))))))..))))) (-11.02 = -11.26 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:38 2011