| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,585,442 – 16,585,512 |
| Length | 70 |
| Max. P | 0.655863 |
| Location | 16,585,442 – 16,585,512 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.50651 |
| G+C content | 0.44474 |
| Mean single sequence MFE | -15.65 |
| Consensus MFE | -9.32 |
| Energy contribution | -9.73 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16585442 70 - 23011544 GGAUAUAUUAAACUAAAUAAG---------UGCGCGUCACGUA--CAGGACAUGUCUUCGUCUUCGGAUGCGUUUCUCUUC----- ..................(((---------.(((((((.((..--.(((((........))))))))))))))....))).----- ( -15.10, z-score = -1.10, R) >droSim1.chr2L 16280533 68 - 22036055 GGAUAUAUUAAACUAAAUAAG---------UGCGCGUCACGUA--CAGGACAUGUCUUCGUCUUC-GAUGCG-UUCUCUUC----- ...................((---------.(((((((....(--(((((....)))).))....-))))))-).))....----- ( -12.90, z-score = -0.43, R) >droSec1.super_7 232915 70 - 3727775 GGAUAUAUUAAACUAAAUAAG---------UGCGCGUCACGUA--CAGGACAUGUCUUCGUCUUCGGAUGCGUUUCUCUUC----- ..................(((---------.(((((((.((..--.(((((........))))))))))))))....))).----- ( -15.10, z-score = -1.10, R) >droYak2.chr2R 16621308 66 + 21139217 GGAAAUAUUAAACUA----AG---------UGCGCGUCACGUA--CAGGACAUGUCUUCGUCUUCGGAUGCGUUCCUCUUC----- (((............----..---------.(((((((.((..--.(((((........))))))))))))))))).....----- ( -15.46, z-score = -1.15, R) >droEre2.scaffold_4845 19653952 70 - 22589142 UGAAGUAUUAAACUAAGUGAG---------UGCGCGUCACGUA--CAGGACAUGUCUUCGUCUUCGGAUGCGUUUCUCUUC----- ..................(((---------.(((((((.((..--.(((((........))))))))))))))..)))...----- ( -18.60, z-score = -1.11, R) >droAna3.scaffold_12916 202691 73 + 16180835 GGAUAUAUUAAACUAAAUAAGUGUGCAGAAUGUGCGUCACGUA--CAGGACACGUCUUCGUCUUCGGAUGCGCUC----------- ......................((((.(((..((.(((.(...--..)))).))..)))(((....)))))))..----------- ( -15.80, z-score = 0.05, R) >droWil1.scaffold_181132 33099 71 + 1035393 ------AUAGAAGUGACAUAA---------UGUGCGUCACGUACCCAAAAGGAAACAGCAUUGCCAGAGAUGCUUCCACCUACUUC ------...((((((......---------.(((((...)))))......(((...((((((......)))))))))...)))))) ( -16.60, z-score = -2.13, R) >consensus GGAUAUAUUAAACUAAAUAAG_________UGCGCGUCACGUA__CAGGACAUGUCUUCGUCUUCGGAUGCGUUUCUCUUC_____ ...............................(((((((.((.....(((((........))))))))))))))............. ( -9.32 = -9.73 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:37 2011