| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,567,477 – 16,567,581 |
| Length | 104 |
| Max. P | 0.941466 |
| Location | 16,567,477 – 16,567,581 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.75 |
| Shannon entropy | 0.37098 |
| G+C content | 0.43089 |
| Mean single sequence MFE | -24.32 |
| Consensus MFE | -14.81 |
| Energy contribution | -15.82 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16567477 104 - 23011544 AGAGGGAGAUAGAAAGACAGAGAGUAAGAGA---CAGCAGCAGCUGUGACAGAGAAGGAGAUAGAACAUUAAACAAUUUGUUUCACAUUUGUGGAAGCGUUCCCUCG .(((((((......................(---((((....))))).(((((....((((((((...........))))))))...))))).......))))))). ( -26.10, z-score = -3.07, R) >droSim1.chr2L 16261926 104 - 22036055 AGAGGGAGAUAGGAAGACAGAGAGUAAGAGA---CGGCAGCAGCUGUGACAGAGAAGGAGAUAGAACAUUAAACAAUUUGUUUCACAUUUGUGGAAGCGUUCCCUCG .(((((((......................(---((((....))))).(((((....((((((((...........))))))))...))))).......))))))). ( -25.40, z-score = -2.36, R) >droSec1.super_7 214608 104 - 3727775 AGAGGGAGAUAGGAAGACAGAGAGUAAGAGA---CGGCAGCAGCUGUGACAGAGAAGGAGAUAGAACAUUAAACAAUUUGUUUCACAUUUGUGGAAGCGUUCCCUCG .(((((((......................(---((((....))))).(((((....((((((((...........))))))))...))))).......))))))). ( -25.40, z-score = -2.36, R) >droYak2.chr2R 16603487 103 + 21139217 -GAAGGGAGAGAGAAGACAGAGAGUAAGAGA---CAGCAGCAACUGUGACAGAGAUGGAGAUAGAACAUUAAACAAUUUGUUUCACAUUUGUGGACCCAUUCCCUCG -((.(((((.....................(---(((......))))..((.(((((((((((((...........)))))))).))))).))......))))))). ( -21.90, z-score = -1.46, R) >droEre2.scaffold_4845 19635853 107 - 22589142 UGAGGGAGAUAACAAGACAGAGCGAAAGAGACAGCAGCAGCAGCUGUGACAGAGAUGGAGAUAAAACAUUAAACAAUUUGUUUCACAUUUGUGGAAACGUUCCCUCG .(((((((..............(....).....(((((....)))))..((.(((((((((((((...........)))))))).))))).))......))))))). ( -29.80, z-score = -3.71, R) >droAna3.scaffold_12916 15996325 89 - 16180835 ------------AGAGUCAGACACAAAUAGA----GAUAGAGA--GAGAGGGAUAGAGAGAUGGGACAUUAAACAAUUUGUUUCACAUUUGUGGAACCUUUUCCUUC ------------...................----....(((.--(((((((.((.(((..((..(((..........)))..))..))).))...)))))))))). ( -17.30, z-score = -0.48, R) >consensus AGAGGGAGAUAGGAAGACAGAGAGUAAGAGA___CAGCAGCAGCUGUGACAGAGAAGGAGAUAGAACAUUAAACAAUUUGUUUCACAUUUGUGGAAGCGUUCCCUCG .(((((((..........................((((....))))..(((((....((((((((...........))))))))...))))).......))))))). (-14.81 = -15.82 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:33 2011