| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,554,523 – 16,554,625 |
| Length | 102 |
| Max. P | 0.600837 |
| Location | 16,554,523 – 16,554,625 |
|---|---|
| Length | 102 |
| Sequences | 9 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.31 |
| Shannon entropy | 0.66645 |
| G+C content | 0.41744 |
| Mean single sequence MFE | -16.74 |
| Consensus MFE | -8.37 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16554523 102 + 23011544 --------UGUUCGAGGACCGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUAUGUUAUUAUGUCUUGCCUACAUAGCUGCUCCUUUUUUA---- --------.....(((((..((.(((((.((((.(((-.......))).)))).)))))...........((((((...............))))))..))))))).....---- ( -18.56, z-score = -0.67, R) >droSim1.chr2L 16250451 106 + 22036055 --------UGUUCGAGGACCGCUGCAACAUGUUUGCA-AUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUAUGUUAUUAUGUCUUGCCUACUUUGCUGCUCCUUUUUUUUGUA --------.....(((((..((.((((...((..(((-(..(((....(((((((.((.........)).)).)))))..)))..))))..)).)))).)))))))......... ( -19.60, z-score = -1.03, R) >droSec1.super_7 201193 105 + 3727775 --------UGUUCGAGGACCGCUGCAACAUGUUUGCA-AUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUAUGUUAUUAUGUCUUGCCUACUUUACUGCUCCUUUUUUUUUA- --------.....(((((..((.(((((.((((.(((-(.....)))).)))).)))))............((((....))))................)))))))........- ( -15.40, z-score = -0.23, R) >droYak2.chr2R 16590479 101 - 21139217 --------UCUUCAAGGACCGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUACGUUAUUAUGUCUUGCCUACUUUGCUGCUCCUUUCUG----- --------.....((((((.((.(((((.((((.(((-.......))).)))).))))).............((((....))))............)).).)))))....----- ( -16.30, z-score = -0.72, R) >droEre2.scaffold_4845 19623415 93 + 22589142 --------UCUUCAAGGACCGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUAUGUUAUUAUGUCUUGCCUACUUUCUUACU------------- --------......(((((....(((((.((((.(((-.......))).)))).))))).............(((....))))))))...............------------- ( -11.70, z-score = 0.22, R) >droAna3.scaffold_12916 175518 113 - 16180835 ACUCCCACUCGCCGAGCCUGGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACAUUUUAUCUAUGUUAUUAUGUCUUGCCUACUUUUCUGCCGCUUUUAUCUGC- .............((((..((((((((.....)))))-........((..(((((.((..(((((.......)))))..))...)))))..))......)))))))........- ( -19.80, z-score = -0.68, R) >dp4.chr4_group3 8283980 87 + 11692001 ------CCCCCCCGCUGCCUGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACAUUUUAGCCAGGCUAUAAUGCUUCACCCACU--------------------- ------.......((.((((((((((((.((((.(((-.......))).)))).))))).........)).)))))......))..........--------------------- ( -18.30, z-score = -1.10, R) >droPer1.super_1 9732838 93 + 10282868 CCCCCACCCCCCCGCUGCCUGCUGCAACAUGUUUGCA-UUUCAUUUGUUAGCAAGUUGUCAACAUUUUAGCCAGGCUAUAAUACUUCACCCACU--------------------- ................((((((((((((.((((.(((-.......))).)))).))))).........)).)))))..................--------------------- ( -17.90, z-score = -1.93, R) >droGri2.scaffold_15203 6879438 83 + 11997470 -------------------UCCUUUGACAGCGCUGCAGCUUCAUCAGCCUCCUCGUCGUCCACAUCAUCUGCGGCUUGUUGUGUCUCAGUCGUCUCAUCAUC------------- -------------------.......((((((((((((((.....)))......((.....))......))))))..)))))....................------------- ( -13.10, z-score = 0.79, R) >consensus ________UCUUCGAGGACCGCUGCAACAUGUUUGCA_UUUCAUUUGUUAGCAAGUUGUCAACCUUUUAUCUAUGUUAUUAUGUCUUGCCUACUUUGCUGCU_CUUU________ .......................(((((.((((.(((........))).)))).)))))........................................................ ( -8.37 = -8.03 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:29 2011