| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,553,002 – 16,553,104 |
| Length | 102 |
| Max. P | 0.596921 |
| Location | 16,553,002 – 16,553,104 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Shannon entropy | 0.37141 |
| G+C content | 0.40973 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.03 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16553002 102 + 23011544 GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGGCAGCGAGACAUUUUUGGCCUUG-GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG----AAUACGGGCAAUAAAC .(((((.(((((.((((((((((.((......))..))))))))))....))))-).)))))..(((((((.....)))))))((((----....))))........ ( -29.00, z-score = -1.88, R) >droSim1.chr2L 16248903 102 + 22036055 GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGGCAGCGAGACAUUUUUGGCCUUG-GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG----AAUACGGGCAAUAAAC .(((((.(((((.((((((((((.((......))..))))))))))....))))-).)))))..(((((((.....)))))))((((----....))))........ ( -29.00, z-score = -1.88, R) >droSec1.super_7 199641 102 + 3727775 GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGGCAGCGAGACAUUUUUGGCCUUG-GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG----AAUACGGGCAAUAAAC .(((((.(((((.((((((((((.((......))..))))))))))....))))-).)))))..(((((((.....)))))))((((----....))))........ ( -29.00, z-score = -1.88, R) >droYak2.chr2R 16588895 102 - 21139217 GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGACAGCGAGACAUUUUUGGCCUUG-GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG----AAUACGGGCAAUAAAC .(((((.(((((.((((((((((.((......))..))))))))))....))))-).)))))..(((((((.....)))))))((((----....))))........ ( -28.80, z-score = -2.31, R) >droEre2.scaffold_4845 19621850 102 + 22589142 GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGGCAGCGAGACAUUUUUGGCCUUG-GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG----AAUACGGGCAAUAAAC .(((((.(((((.((((((((((.((......))..))))))))))....))))-).)))))..(((((((.....)))))))((((----....))))........ ( -29.00, z-score = -1.88, R) >droAna3.scaffold_12916 174327 107 - 16180835 GGUUUUUCCAAGCAAAAUGCUUUAUGUGCAGCCAGCGAGACAUUUUUGGCCUUGUAUAAAAUAUGAGUUGCAUUUUGCAGCUCCUGGUUACGGUCCAGGCCAUAAAC (((((..((((((.....)))).....(.((((((((((.((....))..))))..........(((((((.....))))))))))))).)))...)))))...... ( -29.50, z-score = -1.01, R) >apiMel3.Group13 2728248 89 + 8929068 GAUUUUUCCAACUGGAAUCUUCCAUGAAGAGGACGCGCGAGUGUGUUCGCGUUG-AUAUAAUAUGCGCGAUGCAUGAAAAAGCAAUG----AAC------------- ((...((((....))))...))((((..(((.((((....)))).)))((((..-.........))))....))))...........----...------------- ( -22.40, z-score = -0.80, R) >consensus GGUUUUUCCAAGUAAAAUGUUUUAUGAGCAGGCAGCGAGACAUUUUUGGCCUUG_GUAAAAUAUGAGUUGCAUUUUGCAGCUCCCUG____AAUACGGGCAAUAAAC .(((((..((((.((((((((((.((......))..))))))))))....))))...)))))..(((((((.....)))))))........................ (-16.66 = -17.03 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:28 2011