Locus 2135

Sequence ID	dm3.chr2L
Location	16,513,774 – 16,513,895
Length	121
Max. P	0.791537

overview

Window 8

Location	16,513,774 – 16,513,895
Length	121
Sequences	3
Columns	121
Reading direction	forward
Mean pairwise identity	56.47
Shannon entropy	0.62699
G+C content	0.41812
Mean single sequence MFE	-31.90
Consensus MFE	-10.75
Energy contribution	-10.20
Covariance contribution	-0.55
Combinations/Pair	1.27
Mean z-score	-1.84
Structure conservation index	0.34
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.70
SVM RNA-class probability	0.791537
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16513774 121 + 23011544
AAAUAAUUUAGCGGACUUUGACAGGGUGCCUGAUAUCGUAAAAUCGAUCAGGGAAUUCUCUGGAAAUCCAGCAGAAUUCGGGUCUUGGAAAAAGAGCGUUGAUAGAAUCAUGGAGACUUAU
.......((((((..((((..(((((..(((((..(((......))))))))(((((((((((....)))).)))))))...)))))...))))..)))))).........(....).... ( -35.70, z-score =  -2.48, R)
>droAna3.scaffold_13034 1551495 108 - 2223656
-------------GACUUAGAUCGGGUACCAGAUAUAGUGAAGUGCAUGAAGGAAUUUUCGGGAAAGCCCACAGAAUUUAGUUCGUGGACAAAAACGGUAGAUCGAGUGCUAGAAGCCUAC
-------------........((.(((((..(((...((...((.((((((.(((((((.(((....)))..)))))))..)))))).))....)).....)))..))))).))....... ( -25.60, z-score =  -1.09, R)
>droWil1.scaffold_180943 117849 121 + 149748
AGAUAAUUGGCAUGAGGUAGAUAAAGUUCCAGACUUAGUGAAAGGUCUAAAGGAAUUCUCUGGUAAUCCAGCAGAAUUUACAACUUGGUUCGCUUCAACCUCGCGUGUAAUGGAUGCCUUU
........(((((((((..(((.(((((..((((((......))))))....(((((((((((....)))).)))))))..))))).)))..))))..((...........)))))))... ( -34.40, z-score =  -1.96, R)
>consensus
A_AUAAUU_____GACUUAGAUAGGGUACCAGAUAUAGUGAAAUGCAUAAAGGAAUUCUCUGGAAAUCCAGCAGAAUUUAGAUCUUGGAAAAAAACAGUAGAUCGAGUAAUGGAAGCCUAU
....................................................(((((((((((....)))).))))))).......................................... (-10.75 = -10.20 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:26 2011