| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,493,547 – 16,493,660 |
| Length | 113 |
| Max. P | 0.893999 |
| Location | 16,493,547 – 16,493,660 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.91 |
| Shannon entropy | 0.34411 |
| G+C content | 0.37631 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -18.31 |
| Energy contribution | -19.86 |
| Covariance contribution | 1.55 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16493547 113 + 23011544 AUAAGAUUUGUAUGGGAAAUCGUCAGGUGAUGGCUUAAAUG--GGAUACAAUCUAUUGACCACCAGUUUUGCGUGUAAAACUAAAUGCGAUCAACUGGAGGAGUUUCAAAGUCAA .....(((((.((((....)))))))))..((((((...((--..((.(((....))).((.((((((((((((..........))))))..)))))).)).))..)))))))). ( -26.20, z-score = -0.88, R) >droSim1.chr2L 16202505 115 + 22036055 AUAAGAUUUGUAUGGAAAAUCAUCAGGUGAUGGCUUAAAUGUGGGAUACAAUCUAUUGACCGCCAGUUUUGCGUGUAAAACUAAAUGCGAUCAACUGGUGGAGUUUCAAAGUCAA ....(((((...(((((..(((((((.((((.((......((((....(((....))).)))).(((((((....)))))))....)).)))).)))))))..)))))))))).. ( -31.40, z-score = -2.38, R) >droSec1.super_7 140396 115 + 3727775 AUAAGAUUUAUAUGGAAAAUCAUCAGGUGAUGGCUUAAAUGUGGGAUACAAUCUAUUGACCACCAAUUUUGUUUGUAAACCUAAAUGCGAUCAACUGGUGGAGUUUCAAAGUCAA ....(((((...(((((..(((((((.((((.((........((..(((((.(.((((.....))))...).)))))..)).....)).)))).)))))))..)))))))))).. ( -30.72, z-score = -2.50, R) >droYak2.chr2R 16537258 111 - 21139217 AUAAGAUUUGUAUGGAAAACCAUCAGGUGAUGGCUUAAAAGUGGGAUUCAAUUUAUUGA--AUCAAU--UGCGUGUAAAACUAAACGCGAUCAACUGAUGGAGUUUUAAGGUCUA ...((((((...(((((..(((((((.((((.((......(..((((((((....))))--)))..)--..)((.....)).....)).)))).)))))))..))))))))))). ( -31.50, z-score = -3.81, R) >droEre2.scaffold_4845 19565183 92 + 22589142 AUAAGAUUUGUAUGGCCAACCAUCAGGUGAUGGCUUCACAGGGGGA------CUAUUGAC-----------------UGACUAAACGCGUUCAACUGGAGGAGUUUCAAAGUCAA ........(((..((((((((....)))..)))))..)))((....------)).(((((-----------------(....((((.(.(((....))).).))))...)))))) ( -24.40, z-score = -0.98, R) >consensus AUAAGAUUUGUAUGGAAAAUCAUCAGGUGAUGGCUUAAAUGUGGGAUACAAUCUAUUGACCACCAAUUUUGCGUGUAAAACUAAAUGCGAUCAACUGGUGGAGUUUCAAAGUCAA ....(((((...(((((..(((((((.((((.((...........((((.....((((.....)))).....))))..........)).)))).)))))))..)))))))))).. (-18.31 = -19.86 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:23 2011