| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,471,456 – 16,471,566 |
| Length | 110 |
| Max. P | 0.625787 |
| Location | 16,471,456 – 16,471,566 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.67 |
| Shannon entropy | 0.47865 |
| G+C content | 0.51082 |
| Mean single sequence MFE | -30.19 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.28 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16471456 110 + 23011544 -------AACGAGGGGUUAAGAGGGGGGCAUUCGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAGUCGGAAUCGGCAUAGG -------................(((.(((((.(((((((((.(((((.....)))))))))))(((((...))))))))....))))).))).......((((....))))..... ( -29.50, z-score = -0.76, R) >droSim1.chr2L 16180394 109 + 22036055 --------AAAAGGGGUUAAGCGGGGGGCAUUCGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAGUCGGAAUCGGCAUAGG --------.....((.(((((((((.....))))).((((((.(((((.....)))))))))))..)))).)).((((((((...))))..(((((....)))))))))........ ( -29.70, z-score = -0.88, R) >droSec1.super_7 117706 109 + 3727775 --------AAAAGGGGUUGAGAGGGGAGCAUUCGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAGUCGGAAUCGGCAUAGG --------.......(((((...(((.(((((.(((((((((.(((((.....)))))))))))(((((...))))))))....))))).)))(((....)))....)))))..... ( -29.30, z-score = -0.72, R) >droYak2.chr2R 2929772 117 + 21139217 AGGGGGCCAUAAGGGGUUAAGAGGGGGGCAUUUGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCUCGAUUGGAGUCGGAAUCGGCAUAGG .....(((...............(((.(((((((((((((((.(((((.....)))))))))))(((((...)))))))))...))))).)))((((........)))))))..... ( -31.80, z-score = -1.43, R) >droEre2.scaffold_4845 19538246 107 + 22589142 ----------AAGGGGUUAAGAGGGGUACAUGGGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAGUCGGAAUCGGCAUAGG ----------......((((..(((((((.((((((((((((.(((((.....)))))))))))(((((...)))))))).))).)))).)))..)))).((((....))))..... ( -29.60, z-score = -1.48, R) >droAna3.scaffold_12916 99425 112 - 16180835 -----UGGGAGAGGCCUGCUCGGGGGGACAUUCGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAAUCGGAAUCGGCAUAGG -----........(((.(((((((....).......((((((.(((((.....)))))))))))..))))))..((((((((...))))..(((((....))))))))))))..... ( -32.80, z-score = 0.13, R) >dp4.chr4_group3 8193217 102 + 11692001 ---------------AGGGGCUGUGGAAACGGGGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGUUUGCAUUAAGCGCGCACGAUUGGAAUUGGCAUAGGCACAGA ---------------....(((.((....)).))).((((((.(((((.....))))))))))).((((.(((.....((.....))..((.((((....))))))...))).)))) ( -29.30, z-score = -1.29, R) >droPer1.super_1 9643025 102 + 10282868 ---------------AGCGGCUGUGGAAACGGGGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGUUUGCAUUAAGCGCGCACGAUUGGAAUUGGCAUAGGCACAGA ---------------.((.(((.((....)).))).((((((.(((((.....)))))))))))((((.((((.((.(((.......))).)))))).))))..))........... ( -29.70, z-score = -0.89, R) >droWil1.scaffold_180772 4216344 100 - 8906247 -----------------CGGGGGCCAAGUUGGGGCAGACAACUGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGUUCGCAUUAAUCGUGGACGAUUGGAGUUGGCAUAGGCACUCA -----------------.((..((((.((((.......))))))))...)).((((((..((((((((.((((.((((((.......)))))))))).))).)))))..)))))).. ( -35.50, z-score = -3.30, R) >droVir3.scaffold_12963 7202766 90 - 20206255 ---------------------------GAAGAGUGGGGCAGUCGACAUAUCAGGUGUCAUUGUCAUUUGAGUCAGUUUACAUUAAGCGCACACGAUUGGAGCUGGCAUAGGCACUGG ---------------------------....((((.((((((.(((((.....)))))))))))......((((((((.((.....((....))..)))))))))).....)))).. ( -24.70, z-score = -1.21, R) >consensus ___________AGGGGUUAAGAGGGGAGCAUUGGCAGACAGUCGGCAUAUCAGGUGUCAUUGUCAUUUGAGUCAGAUUGCAUUAAGUGCGCCCGAUUGGAGUCGGAAUCGGCAUAGG .................................((.((((((.(((((.....)))))))))))((((.((((.(..(((.......)))..))))).))))........))..... (-17.52 = -17.28 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:19 2011