| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,469,753 – 16,469,824 |
| Length | 71 |
| Max. P | 0.846113 |
| Location | 16,469,753 – 16,469,824 |
|---|---|
| Length | 71 |
| Sequences | 8 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 84.36 |
| Shannon entropy | 0.31550 |
| G+C content | 0.37886 |
| Mean single sequence MFE | -15.26 |
| Consensus MFE | -13.76 |
| Energy contribution | -13.71 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16469753 71 - 23011544 UUCAUUUGUUUCUGUGCACUUUUUCUAUGGCCCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU ............(((........(((.((((..((((((......))))))..))))))).......))). ( -13.56, z-score = -0.04, R) >droSim1.chr3R 21672692 71 + 27517382 UUCAUUUUUUUCUGUGCACCUUUUCUAUGGCUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU ............(((........(((.(((((.((((((......)))))).)))))))).......))). ( -16.06, z-score = -1.44, R) >droSec1.super_7 116022 71 - 3727775 UUCAUUUUUUUCUGUGCACCUUUUCUAUGGCUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU ............(((........(((.(((((.((((((......)))))).)))))))).......))). ( -16.06, z-score = -1.44, R) >droYak2.chr2R 2928153 71 - 21139217 UCUAUUUGUUUCUGUGCACUUUUUCUAUGGCUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU ............(((........(((.(((((.((((((......)))))).)))))))).......))). ( -16.06, z-score = -1.35, R) >dp4.chr4_group3 8191727 71 - 11692001 UUUGCUGUUUUUCGUUUUUCGUUUCUAUAACUCGCGAUCUGGAAUGAUUGCAAGUCGGGAUCAAUAAGCAU ..((((...(..((......(((.....)))..((((((......))))))....))..)......)))). ( -14.40, z-score = -0.60, R) >droPer1.super_1 9641552 71 - 10282868 UUUGCUGUUUUUCGUUUUUCGUUUCUAUAACUCGCGAUCUGGAAUGAUUGCAAGUCGGGAUCAAUAAGCAU ..((((...(..((......(((.....)))..((((((......))))))....))..)......)))). ( -14.40, z-score = -0.60, R) >droAna3.scaffold_12916 97915 62 + 16180835 --------UUUGUACCUUUU-UUUCUAUGACUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU --------............-..(((.(((((.((((((......)))))).))))))))........... ( -15.50, z-score = -2.69, R) >droEre2.scaffold_4845 19536618 71 - 22589142 UUUAUUUGUUUCUGUGCACCUUUUCUAUGGCUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU ............(((........(((.(((((.((((((......)))))).)))))))).......))). ( -16.06, z-score = -1.26, R) >consensus UUUAUUUUUUUCUGUGCACCUUUUCUAUGGCUCGCGAUCUGGAAUGAUUGCAAGUCAGGAUCAAUAAACAU .......................(((.(((((.((((((......)))))).))))))))........... (-13.76 = -13.71 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:18 2011