| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,469,368 – 16,469,477 |
| Length | 109 |
| Max. P | 0.550965 |
| Location | 16,469,368 – 16,469,477 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 86.61 |
| Shannon entropy | 0.21903 |
| G+C content | 0.44368 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.70 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16469368 109 + 23011544 GAAUUGAUUGCACUUCGCAGGAUUGUAUUUCUAAACAGAUAGAUUGCUAUCACUGACCCACUGAUCCCUGCGAAAGCACCACCAUUCUGCACAA-AUCAUGAUGCGAACA ((((.(..(((..((((((((..(((........)))(((((....)))))...............)))))))).)))...).))))((((((.-....)).)))).... ( -24.10, z-score = -1.97, R) >droYak2.chr2R 2927772 99 + 21139217 -----------GAAUGAAAGAGAAGUAUUUGCAAACUGACAGAUUGCUAUCACUGACCCACUGAUCCCUGCGAAAGUACCACCAUUCCGCACAAGAUCAUGAUGCGAACA -----------(((((...((..(((((((((.....).)))).)))).)).................(((....)))....)))))((((((......)).)))).... ( -16.50, z-score = -0.86, R) >droSec1.super_7 115613 109 + 3727775 GAAUGGAUUGCACUUCGCAGAACUGUAUUUGCAAACUGAUAGAUUGCUAUCACUGACCCACUGAUCCCUGCGAAAGCACCACCAUUCUGCACAA-AUCAUGAUGCGAACA ((((((..(((..(((((((...(((....)))...((((((....))))))...............))))))).)))...))))))((((((.-....)).)))).... ( -27.80, z-score = -3.19, R) >droSim1.chr3R 21672283 109 - 27517382 GAAUGGAUUGCACUUCGCAGAACUGUAUUUGCAAACUGAUAGAUUGCUAUCACUGACCCACUGAUCCCUGCGAAAGCACCACCAUUCUGCACAA-AUCAUGAUGCGAACA ((((((..(((..(((((((...(((....)))...((((((....))))))...............))))))).)))...))))))((((((.-....)).)))).... ( -27.80, z-score = -3.19, R) >consensus GAAUGGAUUGCACUUCGCAGAACUGUAUUUGCAAACUGAUAGAUUGCUAUCACUGACCCACUGAUCCCUGCGAAAGCACCACCAUUCUGCACAA_AUCAUGAUGCGAACA .......(((((....((((((..((...........(((((....))))).................(((....)))..))..)))))).((......)).)))))... (-14.45 = -15.70 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:18 2011