| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,441,717 – 16,441,816 |
| Length | 99 |
| Max. P | 0.644376 |
| Location | 16,441,717 – 16,441,816 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 58.93 |
| Shannon entropy | 0.67697 |
| G+C content | 0.55481 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -12.64 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.55 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16441717 99 - 23011544 -----CCAACUUCUUCCCCCUUACCAGCCUGACGUUUCCCUUUUUGUGGGCUCGAGUUACCAGUUGCAGCUAACUGACUUGCUUAUUGGCCUGGCUUUCGGUCG -----.................(((((((..(((..........)))(((((.((((...((((((....))))))....))))...)))))))))...))).. ( -19.10, z-score = 0.98, R) >droYak2.chr2R 2898815 81 - 21139217 -----------------------CCAGCCUGAUGUGUUCCCUUUUGUGGGCUCGAGUUACCAGUUGCAGCUAACUGACUGGCUUAUUGGCCUGGCUUUCGGUUG -----------------------.(((((......(..(((......)))..)((((((.((((((....))))))...((((....))))))))))..))))) ( -22.60, z-score = 0.01, R) >droAna3.scaffold_12916 70554 102 + 16180835 CCAAGAUAUUCGCCCCCCUUCUGGUUCCUGGUAUUUUUCCCAUUUCAGGGUUCAAGUUACCAGUUGCAGCUAACUGAGU-GCUUAUUGGCCCGGUCUCGGUCC- ((.((((....(((.........((..((((((.(((.(((......)))...))).))))))..))(((.........-)))....)))...)))).))...- ( -25.30, z-score = -0.55, R) >droPer1.super_1 9615452 75 - 10282868 --------------CCCCCCCCGUCCCCCCGAC----CACCUUUCGGGGGCUCGGGUUACCAGUUGCAGCUAACUGACUGGCUUUUUGGCCGA----------- --------------.....((((..(((((((.----......)))))))..))))....((((((....))))))..(((((....))))).----------- ( -32.10, z-score = -2.63, R) >consensus ______________CCCCCCCUGCCACCCUGACGUUUCCCCUUUUGUGGGCUCGAGUUACCAGUUGCAGCUAACUGACUGGCUUAUUGGCCUGGCUUUCGGUC_ ...............................................(((((.(((((..((((((....))))))...)))))...)))))............ (-12.64 = -12.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:12 2011