Locus 2123

Sequence ID	dm3.chr2L
Location	16,435,406 – 16,435,488
Length	82
Max. P	0.512419

overview

Window 9

Location	16,435,406 – 16,435,488
Length	82
Sequences	12
Columns	83
Reading direction	forward
Mean pairwise identity	93.80
Shannon entropy	0.13517
G+C content	0.37029
Mean single sequence MFE	-18.53
Consensus MFE	-12.46
Energy contribution	-12.54
Covariance contribution	0.08
Combinations/Pair	1.00
Mean z-score	-2.36
Structure conservation index	0.67
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.04
SVM RNA-class probability	0.512419
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16435406 82 + 23011544
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
...((((-(((((((((((....((((.....))))...)))))))))..))))))....(((....)))(((......))). ( -19.10, z-score =  -2.39, R)
>droSim1.chr2L 16147385 82 + 22036055
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
...((((-(((((((((((....((((.....))))...)))))))))..))))))....(((....)))(((......))). ( -19.10, z-score =  -2.39, R)
>droSec1.super_7 81183 82 + 3727775
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
...((((-(((((((((((....((((.....))))...)))))))))..))))))....(((....)))(((......))). ( -19.10, z-score =  -2.39, R)
>droYak2.chr2R 2892544 82 + 21139217
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
...((((-(((((((((((....((((.....))))...)))))))))..))))))....(((....)))(((......))). ( -19.10, z-score =  -2.39, R)
>droEre2.scaffold_4845 19499471 82 + 22589142
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
...((((-(((((((((((....((((.....))))...)))))))))..))))))....(((....)))(((......))). ( -19.10, z-score =  -2.39, R)
>droAna3.scaffold_12916 64650 82 - 16180835
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCGG
.....((-((...................(((((((((((.....)))))))))))....(((....))).........)))) ( -19.40, z-score =  -2.50, R)
>dp4.chr4_group3 8159852 82 + 11692001
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGUGGGUUCUACGCCG
...((((-.((((.......((....)).(((((((((((.....)))))))))))..........)))).))))........ ( -19.90, z-score =  -2.21, R)
>droPer1.super_1 9609931 82 + 10282868
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGUGGGUUCUACGCCG
...((((-.((((.......((....)).(((((((((((.....)))))))))))..........)))).))))........ ( -19.90, z-score =  -2.21, R)
>droWil1.scaffold_180772 4623097 78 + 8906247
CAUGGCC-GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUAC----
...((((-.....................(((((((((((.....)))))))))))....(((....))).))))....---- ( -18.80, z-score =  -2.72, R)
>droMoj3.scaffold_6500 7038047 82 + 32352404
CAUUGCCCGACAAAAUAAUAUCAUUUG-CGAUCAAAGUAAUUAUUUCGCUUUGGUCUACAGAAUAAUUACGGCUUCAACGGCG
....(((.(.((((.........))))-)((((((((..(.....)..)))))))).......................))). ( -14.10, z-score =  -0.78, R)
>droVir3.scaffold_12963 7154295 81 - 20206255
CAUUGCC-GACAAAAUAAUAUCAUUUG-CGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGAAUAAUUACGGCUUCUGCGCCG
.......-...............((((-.(((((((((((.....)))))))))))..)))).......((((......)))) ( -18.90, z-score =  -2.40, R)
>droGri2.scaffold_14978 640573 77 + 1124632
CAUUGUC-GACAAAAUAAUAUCAUUUU-CGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUACGGCUUCUAC----
....(((-(..(((((......)))))-.(((((((((((.....))))))))))).............))))......---- ( -15.90, z-score =  -3.50, R)
>consensus
CAUGGCC_GACAAAAUAAUAUCAUUUGACGAUCAAAGUAAUUAUUUUGCUUUGGUCUACAGCAUAAUUGCGGGUUCUACUCCG
.............................(((((((((((.....)))))))))))........................... (-12.46 = -12.54 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:11 2011