| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,415,119 – 16,415,232 |
| Length | 113 |
| Max. P | 0.866386 |
| Location | 16,415,119 – 16,415,232 |
|---|---|
| Length | 113 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.65 |
| Shannon entropy | 0.57816 |
| G+C content | 0.33675 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -6.96 |
| Energy contribution | -6.97 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16415119 113 + 23011544 AAUUGUAAGCGGAUAUUUAUUCUCCAUCAUUUCCGCUCAUUUGAAUUUUUUCGCCCCACUCGGACGGGAAAAGGAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC ...(((..(((((..................)))))((.(((((((((((..(((((........)))..(((....)))....))....))))))))))).))...)))... ( -24.47, z-score = -2.56, R) >droSim1.chr2L 16126331 112 + 22036055 AAUUGUAAGCGGAUAUUUAUUCUCCAUCAUUUCCGCUCAUUUGAAUUUUUUCGCCCCACUUGGGCGG-AAAAGGAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC ...(((..(((((..................)))))((.(((((((((((((((((.....))))))-).(((....)))...........)))))))))).))...)))... ( -29.27, z-score = -4.10, R) >droSec1.super_7 60862 112 + 3727775 AAUUGUAAGCGGAUAUUUAUUCUCCAUCAUUUCCGCUCAUUUGAAUUUUUUCGCCCCACUUGGGCGG-AAAAGGAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC ...(((..(((((..................)))))((.(((((((((((((((((.....))))))-).(((....)))...........)))))))))).))...)))... ( -29.27, z-score = -4.10, R) >droYak2.chr2R 2871946 112 + 21139217 AAUUGUAAGCGGAUAUUUAUUCUCCAUCAUUUCCGCUCAUUUGAAUUUUUUCGGCCCUCUUGGAUGG-AAAAGGAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAAUACAC ...((((.(((((..................)))))((.(((((((((((..(((((....))....-..(((....)))....)))...))))))))))).))....)))). ( -25.17, z-score = -2.53, R) >droEre2.scaffold_4845 19479908 111 + 22589142 AAUUGUAAGCGGAUAUUUGUUCUCCAUCUUUUCCGCUCAUUUGAAUUUUCUCGCCCCACUUGGGUGG-GAA-GGAAACGUAUUUGCUAAUAAAAAUUCAAAAGAUAAAUACAC ...((((.(((((....((.....)).....)))))((.(((((((((((((((((.....))))))-)).-(....)..............))))))))).))....)))). ( -30.10, z-score = -3.32, R) >droAna3.scaffold_12916 44502 110 - 16180835 UAUUGUCGGCGGAUAUUUAUUUCCCAUAAUUUCCGCUCAUUUUAAUUUUCCC-UCGUACUCCCGGGG--AUGGCUAACUUAUUUGCUAAUCAAAAUUCAAAAGAUAAACACAC ..(((((((((((...((((.....))))..))))))..((((((((((.((-(((......)))))--.((((..........))))...)))))).)))))))))...... ( -22.30, z-score = -1.87, R) >dp4.chr4_group3 8135546 108 + 11692001 GAUGGUAAGCGGAUAUUUAUUAACCAUCAUUUCCGCUCGUUUUAAUUUUACA---AAACCCAAAAAC--ACAAAAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC ..(((((((((((..................)))))..(((((........)---))))........--.............))))))......................... ( -11.57, z-score = -1.12, R) >droPer1.super_1 9587226 108 + 10282868 GAUUGUAAGCGGAUAUUUAUUAACCAUCAUUUCCGCUCGUUUUAAUUUUACA---AAACCCAAAAAC--ACAAAAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC ..((((.((((((..................)))))).(((((........)---))))........--))))........................................ ( -9.87, z-score = -0.86, R) >droVir3.scaffold_12963 7134555 88 - 20206255 ----AACAGCGGAUAUUAGGCCAACAUUAUUUCCGGUCAUUUUAAUAUC------AAGCGCCUGG-G-----AGACAC---------AGUACAAAUUCGAAAGAUAAACACAC ----....((.(((((((((((............))))....)))))))------..))..((((-.-----...).)---------)).......((....))......... ( -16.40, z-score = -2.16, R) >droMoj3.scaffold_6500 7019939 90 + 32352404 ---AAUAAGCGGAUAUUGGGACAGCAUUAUUUCCGCUCAUUUUAAUAUC------AACCGCGUGGAG-----AAACAA---------AAUACAAAUUCAAAAGAUAAACACAC ---.....(((((((((((((.(((.........)))..))))))))).------..))))(((...-----......---------.....................))).. ( -12.91, z-score = -1.31, R) >droGri2.scaffold_14978 618242 90 + 1124632 -AAUGUAAGCGGAUAUUAGGACAGCAUUAUUUCCGCUCAUUUUAAUUUC------ACGAGCGUGC-------AGAAAC---------AGCUAAAAUUCAAAAGAUAAACACAC -..(((..(((((...(((.......)))..)))))((.(((.(((((.------...(((((..-------....))---------.))).))))).))).))...)))... ( -12.10, z-score = -0.18, R) >consensus AAUUGUAAGCGGAUAUUUAUUCACCAUCAUUUCCGCUCAUUUUAAUUUUUUC__CACACUCGGGCGG__AAAGGAAACUUAUUUGCUAAUAAAAAUUCAAAAGAUAAACACAC .......((((((..................))))))............................................................................ ( -6.96 = -6.97 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:09 2011