| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,411,905 – 16,412,015 |
| Length | 110 |
| Max. P | 0.780183 |
| Location | 16,411,905 – 16,412,015 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Shannon entropy | 0.40541 |
| G+C content | 0.43607 |
| Mean single sequence MFE | -18.03 |
| Consensus MFE | -12.45 |
| Energy contribution | -12.71 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16411905 110 - 23011544 AGUAUGAAUAUUCAUGCCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACGUCCU-UUCCUUCCAAUUCCUCUUCCUUCGUCCUGUGCGAUUCGCAUUUCUCUGCUCA .((((((....))))))((((..((((((....)))))).)))).((((...))))..-.....................((((.....))))...(((......)))... ( -17.80, z-score = -1.37, R) >droSim1.chr2L 16123091 110 - 22036055 AGUAUGAAUAUUCAUGCCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACGUCCU-UUCCUUCCAAUUCCUCUUCCUUCGUCCUGUGCGAUUCGCAUUUCCCUGCUCA .((((((....))))))((((..((((((....)))))).)))).((((...))))..-.....................((((.....))))...(((......)))... ( -17.80, z-score = -1.60, R) >droSec1.super_7 57702 110 - 3727775 AGUAUGAAUAUUCAUGCCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACGUCCU-UUCCUUCCAAUUCCUCUUCCUUCGUCCUGUGCGAUUCGCAUUUCUCUGCUCA .((((((....))))))((((..((((((....)))))).)))).((((...))))..-.....................((((.....))))...(((......)))... ( -17.80, z-score = -1.37, R) >droYak2.chr2R 2868636 111 - 21139217 AGUAUGAAUAUUCAUGCCUUAUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACGUCCUCUUCCUUCCAAUUCCUCUUCCUUCGUCCUGUGCGAUUCGCAUUUCUCUGCUCA .((((((....)))))).........(((....((((.(((..(((....))).............................((.....))))).))))......)))... ( -16.30, z-score = -1.04, R) >droEre2.scaffold_4845 19476637 111 - 22589142 AGUAUGAAUAUUCAUGCCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACAUCCUUUUCCUUCCAAUUCCUCCUCCUUCGUCCUGUGCGAUUCGCAUUUCUCUGCUCA .((((((....))))))((((..((((((....)))))).)))).((((...))))........................((((.....))))...(((......)))... ( -18.20, z-score = -1.70, R) >droAna3.scaffold_12916 41469 92 + 16180835 UGCAUGAAUAUUCAUACCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGUC------------------CCCUUACUCCUUGGUCCUA-GUAAUACCCAUUUCUCUGCUCA ((((((((((.........))))))))))...(((((..(((((.((.((.------------------.....)))))))))..)..-)))).................. ( -15.10, z-score = -1.23, R) >droMoj3.scaffold_6500 7017911 107 - 32352404 UGCAUGAAUAUUCAUGCCUUGUUUAUGCACAUUUGCGUGUCAAGUGA-AUUGCUCCC--AGCCACAGAGCCACAGAGCCAACCCCCUGCUAACGUUCCAUUUCUUUAGCU- .((((((....))))))((((..((((((....)))))).))))...-...((((..--.((......))....)))).........(((((.(........).))))).- ( -23.20, z-score = -1.31, R) >consensus AGUAUGAAUAUUCAUGCCUUGUUUAUGCAUAUUUGCGUGUCAAGUGAUGCCACGUCCU_UUCCUUCCAAUUCCUCUUCCUUCGUCCUGUGCGAUUCGCAUUUCUCUGCUCA .((((((....))))))((((..((((((....)))))).))))....................................................(((......)))... (-12.45 = -12.71 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:07 2011